1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAACGTGAGCCCTCAAGACATCCAATCTCAAAACTTGAGTTTGAATTCGAGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagcaatagctcaagtttcctgctttgtgttaataataaaattttcagcttttcaagattgataattatgaaatgcaaacag
species | Oryza sativa |
transcript | LOC_Os06g49430.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAGEST: gi|88406114|gb|CI593894.1|CI593894
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAGEST: gi|33381883|gb|CF197226.1|CF197226
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGNNANGTGGAGAGEST: gi|58663177|gb|CK051863.1|CK051863
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATCTGACAGGTGGAGAGEST: gi|218481672|gb|FG962985.1|FG962985
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAGEST: gi|218490968|gb|FG950249.1|FG950249
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
EST: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAG ATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
genomic: AGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagca ... atgcaaacagATTTTGGAGTATCACCCACAGATGCTGCAAGAGTATATGAAAGGTGGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAACGTGAGCCCTCAAGACATCCAATCTCAAAACTTGAGTTTGAATTCGAGAGACGGAAGCTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGgtacaaagcaatagctcaagtttcctgctttgtgttaataataaaattttcagcttttcaagattgataattatgaaatgcaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG