1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCTCGAGGTCGCCGACGACCCGGATCTCGTCGCCCTCCGCTCCATCCGCATCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggtgcctagtgtgaagtgtgctttgctttgcttcgttttcttttcagtttgggggtgaaatgaaagtttcaggctttctcgtgatccttgatt...
species | Oryza sativa |
transcript | LOC_Os06g49430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29664602|gb|CB660877.1|CB660877
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|33676627|gb|CF304866.1|CF304866
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29633813|gb|CB638822.1|CB638822
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29632340|gb|CB637349.1|CB637349
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29634216|gb|CB639225.1|CB639225
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|66913253|gb|CX100101.1|CX100101
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: CGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29632707|gb|CB637716.1|CB637716
genomic: CGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|40724682|gb|CK431269.1|CK431269
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: GAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTACEST: gi|29627483|gb|CB632494.1|CB632494
genomic: GAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
EST: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAG AACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
genomic: TCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggt ... gatcttgtagAACACAGTGGAAATGGAGTTCTTCACTGAGTATGGAGAAGCAAGCCAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGAGGTCGCCGACGACCCGGATCTCGTCGCCCTCCGCTCCATCCGCATCCGCGTGCCCAAGCGCAAGATGCCTCTCCCCGTCGAGAGCCACAAGAAGgtgaggaggtgcctagtgtgaagtgtgctttgctttgcttcgttttcttttcagtttgggggtgaaatgaaagtttcaggctttctcgtgatccttgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtg