1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GCAACCGTGAGCATTTTGATGCATTAAAAGTATATTTACTGTCAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctacaacttctactgaacttttttcagaatacttgttcttcatgccttaaattgcctttgttcttacag
species | Oryza sativa |
transcript | LOC_Os06g43760.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGEST: gi|86429793|gb|CI082216.1|CI082216
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGG
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGAEST: gi|427179|gb|D23261.1|D23261
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGA
EST: CAAGGTCTATTTCCAGATTGAAGGATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGEST: gi|33690901|gb|CF319140.1|CF319140
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTG
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGAEST: gi|66918923|gb|CX105771.1|CX105771
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGA
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGEST: gi|300216188|gb|HO087973.1|HO087973
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTG
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGAEST: gi|58586694|gb|CF985002.1|CF985002
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGA
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAEST: gi|29627105|gb|CB632116.1|CB632116
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCA
EST: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAG ATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGA
genomic: CAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctac ... gttcttacagATTACGGTGGATTTCATTGAAGGCTTCCCACCAATTGATCTCCAGCTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACCGTGAGCATTTTGATGCATTAAAAGTATATTTACTGTCAAGGTCTATTTCCAGATTGAAGAATGAATTCCAGGCTGGGAATGGCAAGgtaaatctacaacttctactgaacttttttcagaatacttgttcttcatgccttaaattgcctttgttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA