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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcattctcacaagtttcaaatcctatttgcag

Basic information

species Oryza sativa
transcript LOC_Os06g41880.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G073223_T01 (Zea mays), 5'ss of exon 10
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtac--caattgatgatatcagat-tcatcagataaagcataattgctagcattctcacaagtttcaaatcctatttgcag
|||||||| || || || |||||||||||||| ||||| || ||  | |  ||||| |||||||||||||| |  |||||||| |||||||||||||||||||    |     | |  | |||| ||   |||| |   |  | || | |||  ||  | | |    |||| | |||||||
TCCATGGCATGTCCGCACGTTACAGGAATAGCAGCTCTCGTGAAGAGCGTGTATCCGTCATGGTCTCCTTCAGGCATCAAATCGGCAATCATGACAACAGgtatattagcgcgtaacctgagatctccgaagatgacaaactagtgtt-gcaacctgtcgactcatgaatcttgtttgcag

upper sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA11G09420.1 (Glycine max), 5'ss of exon 8
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcattctcacaagtttcaaatcctatttgcag
|| ||| | || || ||  | || ||||| ||  |  | ||||||| ||   |||| ||||||||||| ||||| |||||||| || ||||||||||| ||||  |  |||   | |  | ||   ||  |    |  |||   |  ||   | | || ||   ||   ||       
TCTATGTCTTGTCCTCACATAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatga--gtgtttggtttcacatcttgctctgaatgtattaca---tgagaaattaataactatag------

upper sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA01G36000.1 (Glycine max), 5'ss of exon 10
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcatt--ctcacaagtttcaaatc-ctatttgcag---------------------
|| ||| | || || ||||| || ||||| ||  |  | ||||||| ||   |||| ||||||||||||||||| |||||||| || ||||||||||| ||||  |  ||   || |  | ||   ||  | |    |  ||  |  ||||  || | ||  |   | |   || || ||                      
TCTATGTCTTGTCCTCATGTAACTGGAATTGCAACCTTGGTCAAAGCTGTGCATCCTTCATGGTCTCCTTCTGCTATCAAATCTGCCATCATGACAACTGgtattacatgc--atgtttggtttcacatcttagatgtgttttttcacatttactaagaaactaatagttattacttccacattcaaacatgatttcttatt

upper sequence: LOC_Os06g41880.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv04s0044g01970.t01 (Vitis vinifera), 5'ss of exon 10
TCCATGGCGTGCCCCCATGTTACAGGAATAGCTGCTCTTGTCAAAGGTGCATATCCATCATGGTCTCCTTCTGCAATCAAATCAGCAATCATGACAACAGgtaccaattgatgatatcagattcatcagataaagcataattgctagcattctcacaagtttca-aatcctatttgcag--------------------------------
|| ||||| || || ||||| |||||||| |  ||  | ||||||| ||   |||||||||||||||| |||||||| ||||| || ||||||||||| ||||  ||||     |   || | ||  |   |     |  ||  |||  ||   ||||   | |  | || |    |||                                
TCTATGGCTTGTCCGCATGTAACAGGAATTGTGGCCTTGGTCAAAGCTGTGCATCCATCATGGTCTCCATCTGCAATTAAATCTGCGATCATGACAACGGgtaa-aatt-----tccaagttccaaaactcacgttgttctttatagtttttgaacaaaaattatgaccccaacctcagaaaaaaactgacattacaaaaggaaaatgcag