Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcaaactacataccaattttgaatatgatacactacctaccttgtgtttggacataatttctcttccatgattgaattaacacgcttccttttgttcctgtgacacatcttttgcagCCCATTCCATGGAAGAAGCTGAAGTTCTCTGTGACAGGTTGTGCATCATGGTAGATGGCAGCCTCCAGTGCATTGGGACACCCAAAGAG

Basic information

species Oryza sativa
transcript LOC_Os06g38950.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g38950.1 (Oryza sativa), 3'ss of exon 16
lower sequence: GRMZM2G310144_T01 (Zea mays), 3'ss of exon 15
gtaatgttcaaactacataccaattttgaatatgatacactacctaccttgtgtttggacataatttctcttccatgattgaattaacacgcttccttttgttcctgtgacacatcttttgcagCCCATTCCATGGAAGAAGCTGAAGTTCTCTGTGACAGGTTGTGCATCATGGTAGATGGCAGCCTCCAGTGCATTGGGACACCCAAAGAG
|||||||||| || | | |   |  ||||        ||  |  || |||    |||| |||| |||  | |||   |  | ||||||                         || ||| ||||| |||||||||||||||||||||  ||| ||||||||  |||| |||||||| ||||| |  ||||||||||| || || |||||||||
gtaatgttcagacaagaaa---accttgat-------caacagatagctttgacttggccatagtttgccctcct--acagtattaac-----------------cacagtttatttttcgcagCGCATTCCATGGAAGAAGCTGAAACTCTTTGTGACAGACTGTGTATCATGGTCGATGGAAAGCTCCAGTGCATAGGCACTCCCAAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttccatgattgaattaacacgcttccttttgttcctgtgacacatcttttgcagCCCATTCCATGGAAGAAGCTGAAGTTCTCTGTGACAGGTTGTGCATCATGGTAGATGGCAGCCTCCAGTGCATTGGGACACCCAAAGAG
            aattaac  putative branch site (score: 2)
                                           catctttt  putative PPT
        attgaattaa  TA-rich tract