1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TATGTCGCAAACTTTCATACTATGTCATTCCAAGTGTTCTTTGGTACTTTTCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttgacaatttttatatcatttttttctgtggcatgttctcttatgtgcaagattgttggcatattctttataatttattgaatgagcatagtca...
species | Oryza sativa |
transcript | LOC_Os06g21390.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|58687235|gb|CK075922.1|CK075922
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86493358|gb|CI135991.1|CI135991
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86496021|gb|CI138654.1|CI138654
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86492823|gb|CI135456.1|CI135456
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86498369|gb|CI141002.1|CI141002
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|33690378|gb|CF318617.1|CF318617
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86505484|gb|CI148117.1|CI148117
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|86501658|gb|CI144291.1|CI144291
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|218487594|gb|FG945523.1|FG945523
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGGEST: gi|218488371|gb|FG949752.1|FG949752
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
EST: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAA GTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
genomic: TCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttga ... actattgcagGTCTATTGACTGCAAGTACTTCGATTTTGGAACTGGTACTTGTCCCTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGTCGCAAACTTTCATACTATGTCATTCCAAGTGTTCTTTGGTACTTTTCGAAGGAGGAAAAGCTGGAGATTATTGACAACTATAAAGCCAAACTCAAgtaagtttgacaatttttatatcatttttttctgtggcatgttctcttatgtgcaagattgttggcatattctttataatttattgaatgagcatagtca
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT