1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttcataactggaaatagctctcacgaacaaacaactcggattcactttctttatgttcagtttactttccactattctcttcatgttgtcatcttttagCATTCAACGTATTCCTTTACACCTTCGACCTTGATGAGTTCCTTCCCATTGGATCATCTTCCAATAGACGTGATGCACCTCACTAAGAACCTTTGCGTAA
species | Oryza sativa |
transcript | LOC_Os06g15200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctttctttatgttcagtttactttccactattctcttcatgttgtcatcttttagCATTCAACGTATTCCTTTACACCTTCGACCTTGATGAGTTCCTTCCCATTGGATCATCTTCCAATAGACGTGATGCACCTCACTAAGAACCTTTGCGTAA
tcatctttt CT-rich tract
tttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcataactggaaatagctctcacgaacaaacaactcggattcactttctttatgttcagtttactttccactattctcttcatgttgtcatcttttagCATTCAACGTATTCCTTTACACCTTCGACCTTGATGAGTTCCTTCCCATTGGATCATCTTCCAATAGACGTGATGCACCTCACTAAGAACCTTTGCGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - -gattcac
- - - - - - - - - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt