1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagatattagatggtctatccttctccttttctttctaaagatccaatgtttaattataacaataaatgaattttgacatgtatgtatatatggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAACTGTACGCAACCCTTCTAGCTAATATCATGGTTGTTGCCGACCTTGGTT
species | Oryza sativa |
transcript | LOC_Os06g13350.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAA GCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAAEST: gi|88571424|gb|CI662797.1|CI662797
genomic: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAAgtaactaccc ... atggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAA
EST: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAA GCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAAEST: gi|88355889|gb|CI653297.1|CI653297
genomic: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAAgtaactaccc ... atggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAA
EST: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAA GCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAA
genomic: TGGTTGGAGGGGAAGGAGAAATTAGCTACGCCAAGAATTCCAGGGTTCAAgtaactaccc ... atggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAA
aatgtttaattataacaataaatgaattttgacatgtatgtatatatggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAACTGTACGCAACCCTTCTAGCTAATATCATGGTTGTTGCCGACCTTGGTT
ttaattataacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatattagatggtctatccttctccttttctttctaaagatccaatgtttaattataacaataaatgaattttgacatgtatgtatatatggtgctagGCGAAAGCTATGATTGAGGCTAAGTTTGTCCTTGATAAGGCAATCCGAGAACTGTACGCAACCCTTCTAGCTAATATCATGGTTGTTGCCGACCTTGGTT
- - - - - - - - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtatg