1 5' 3' | 2 5' 3' |
gtcagcaaattttaacataaatatcaaattaacataacttcttgactaaccccattttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTGATCTACGGCATGGCCAAAAGCCACAATACACAGTTCCTCCAAATGTTT
species | Oryza sativa |
transcript | LOC_Os06g09830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGANGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|88338020|gb|CI677003.1|CI677003
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|2311592|gb|C27747.1|C27747
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: GCATCCCTTGTNCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|7332419|gb|AU085765.1|AU085765
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: CATCCCTTGTGCTTAAGACCTGGCATTACTACATGGGGNANCCTCTCACG GTATTTGAAGTGCATGACGATGGNCAATTCAAGATGACAGTTGTTGGACNTEST: gi|88584436|gb|CI701987.1|CI701987
genomic: CATCCCTTGTGC-TGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|25803103|gb|CA759064.1|CA759064
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: CATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACCG GTATNTGAATTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCEST: gi|88328691|gb|CI678492.1|CI678492
genomic: CATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCA-CGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACC
EST: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|44674659|gb|CR288093.1|CR288093
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: GCATCCCTTGTGCTGAGGCCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTEST: gi|88589002|gb|CI706853.1|CI706853
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
EST: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACG GTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
genomic: GCATCCCTTGTGCTGAGACCTGGCACTACTACATGGGGGAACCTCTCACGgtcagcaaat ... tttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCT
tttaacataaatatcaaattaacataacttcttgactaaccccattttttttcagGTATTTGAAGTGCATGACGATGGACAATTCAAGATGACAGTTGTTGGACCTGATCTACGGCATGGCCAAAAGCCACAATACACAGTTCCTCCAAATGTTT
gactaac putative branch site (score: 7)
ccccattttttttc CT-rich tract
ataaatatcaaattaa TA-rich tract