1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtaatacatcgaagatacttttctacaatgaacttcataatagttctgcgcagaccttttagttctcatctctcgaatgccattcttttaccaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAGAATACGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATG
species | Oryza sativa |
transcript | LOC_Os06g04910.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAG ATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAGEST: gi|117217167|gb|CT845381.1|CT845381
genomic: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGgtttgtcagt ... accaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAG
EST: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAG ATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAGEST: gi|29613096|gb|CB618109.1|CB618109
genomic: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGgtttgtcagt ... accaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAG
EST: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAG ATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAGEST: gi|27548671|gb|CA767555.2|CA767555
genomic: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGgtttgtcagt ... accaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAG
EST: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAG ATGCCCAATGGCACAGCCGCGAGGATGTCAAGAAAGCACTAACATTTGCAG
genomic: TGCTTACGCTAAATCATTGGAGATACATGTTGACAAGAAAGAGCTTGAAGgtttgtcagt ... accaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAG
tctgcgcagaccttttagttctcatctctcgaatgccattcttttaccaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAGAATACGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATG
ttcttttacc CT-rich tract
attctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaatacatcgaagatacttttctacaatgaacttcataatagttctgcgcagaccttttagttctcatctctcgaatgccattcttttaccaatgtagATGCCCAATGGCACAGCCGTGAGGATGTCAAGAAAGCACTAACATTTGCAGAATACGAGAAAGCTCAGAGAACAAATGCGCTCAAGGTCAATCAAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - -gttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcc