Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag

Basic information

species Oryza sativa
transcript LOC_Os06g04270.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G033208_T01 (Zea mays), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacatt-----ctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag
||| || ||||||||||||||||| |||   || |||||||| || || || ||||||||||| || ||||| || ||||||||||| ||  | ||||||||| | ||| | |  ||      |  ||||| | | ||| | | | ||  |||| || ||   | ||  | ||||| ||||||
GCACACGATCTGGGTTAAGAATGGGAACACCGGATATGATGACATCCGCGCAGCCATTAAGGAGGCGAAGGCAGTTACTGACAAGCCCACCTTGATCAAGgttggtttcttttgtatctgcaacctttatgtttt-tttcgctgtggattttataatgttggtctaatttatactccttttag

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatat------ttagcca---aaatgtactctttttag-------------------------------------------------------------------------------------------------------
||||  ||| ||||| |||||||||||   ||| |||||||| |||||||| |||||||||||||||||||| || |  ||||| || ||  | ||||||||||| | | || ||    | ||        ||   ||||  |    ||||| |       |||  |    | | ||||  |   ||                                                                                                       
GCATGTAATTTGGGTGAAGAATGGAAATACTGGATATGATGAAATTCGTGCAGCCATTAAGGAAGCAAAGGCTGTCAAAGACAAACCCACTATGATCAAGgttagttacatgaactgaatattgaagcaaattgatttatccaaaacatcatttacgtcactagttacttgagtatactagtggaagtagcataatgtgatttctgtgagcgaaagtaaaccatttttatttgctatttttggggggtattttatcagctttatgttcatctgtgattactatttcacag

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G03200.1 (Glycine max), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag------------------------
||||   || ||||| |||||||||||  ||||||||||||| |||||||| ||||||||||||||||| || || |  ||||| || ||| ||||||||||||| || ||  |  |   |  ||| | ||  | | | |   |||| |  |    |    ||   || ||| |   |                        
GCATGTTATTTGGGTAAAGAATGGAAATAATGGCTATGATGATATTCGTGCTGCCATTAAGGAAGCAAAAGCTGTCAAAGACAAACCCACATTAATCAAGgttagtttact--aattgtggcaatgatatgcatagatttctggcttgtagttaccataacaatcataatctgtcatgatttatagggattcttttaaacta

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag-----------------------
||||  ||| ||||| |||||||||||   ||| |||||||| |||||||| |||||||| ||||||||||| || |  ||||| || ||  | ||||||||||| | | || ||      ||        |    | ||  |    ||||| ||  | ||  |  |||  |   ||                        
GCATGTAATTTGGGTGAAGAATGGAAATACTGGATATGATGAAATTCGTGCAGCCATTAAAGAAGCAAAGGCTGTCAAAGACAAACCCACTTTGATCAAGgttagttacatgaactgaagattgaagcaaatggattgatcaaaaacatcat-ttatgtcactagttaccttgagtatactagtgaaagtagcataatgtg

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacatt--ctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgt-actctttttag
||||   |||||||| ||||||||||||  ||| ||||| ||||| ||||| |||||||||||||| ||  | || ||||||||||| ||  | |||||||| |     |  |   ||  |  | |  |   | || ||   |   | | | ||||| |   |  || |  |    |  ||
GCATGTTATCTGGGTGAAGAATGGAAACACTGGGTATGACGAGATCCGTGCTGCCATTAAGGAAGCTAAAACTGTTACTGACAAGCCTACTTTGATCAAGgtaactacacaatttcttaaccatcaaacatcggttggtctaaagacctttgatattgatttaccatattgcgtaatccag

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT2G45290.1 (Arabidopsis thaliana), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgt-tttgttatagagcttatcatatt-tagccaa-aatgtactctttttag-------------
||||   |||||||| |||||||||||| |||| ||||||||||| ||||| ||||||| |||||| ||||| ||||| |||||||| ||  | || |||||       ||| ||| | | ||  ||  ||   |  |||   | | | | || |  | |||     |||    | ||| |             
GCATGTTATCTGGGTAAAGAATGGAAACAATGGTTATGATGAGATCCGTGCTGCCATTAGGGAAGCTAAGGCTGTAACAGACAAGCCCACTTTGATTAAGgta-----tctgcacactttttttagccatgaactcattaagcaacgtttgatctcatggcctttggtgttaattgttttgtggcatggtttag

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag----------------------------------------
||||   || ||||| |||||||| |||  ||| |||||||| |||||||| ||||| |||||||||||||| || |  |||||||| ||| | || ||||| |      | | ||   || | |     |||||| |  ||||  |  ||  || | |     |   | |||||  |                                        
GCATGTGATTTGGGTGAAGAATGGTAACACTGGGTATGATGAAATTCGTGCTGCCATCAAGGAAGCAAAGGCTGTTAAAGACAAGCCCACATTGATTAAGgtca----tttctccaacatgatctttaaggttttggtcaagagagttccaacttaaacttcttttcccccttttctgaagttggactttacctctataaacttctctgtttatgcag

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv15s0048g00370.t01 (Vitis vinifera), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagatt-cctgtacattc-tgttatgctgtgttttgttatagag---cttatcatatttagcc---aaaatgtactctttttag--------------
||||   |||||||| |||||||||||   ||||||||||||||||||||| ||||| |||||||||||| | || |  ||||| || ||  ||||||||||   |     | ||||| |  || |   |  ||||    | ||      | |  |   ||| |    ||| |  |  |||   |               
GCATGTTATCTGGGTGAAGAATGGAAATACTGGCTATGATGAGATTCGTGCTGCCATCAAGGAAGCAAAGACTGTCAAAGACAAACCCACTTTAATCAAGgtctaacaatttttacatacgcgtaacattacgtttctggaaagcaacattaaggagggttaacttttaaagtaaagacttggaacaatatagtctcttt

upper sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ07729 (Selaginella moellendorffii), 5'ss of exon 4
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag
||| ||||||||||| ||||| ||||||  |||||||||||||||| | || ||||||   ||||| ||| || | |  |||||||||||  | ||||||||   || |  || |||| |    || | || ||||| || |  | |   || |||   |  |               
GCACACAATCTGGGTAAAGAACGGAAACACTGGCTATGATGAGATTAGAGCTGCCATTGCTGAAGCTAAGACGATTAAAGACAAGCCAACCATGATCAAGgt---atacgagt-cattat----tgttatgatttgtcattg--ccttctattttttctcttag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628849|gb|CB633860.1|CB633860
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29616150|gb|CB621162.1|CB621162
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29618033|gb|CB623045.1|CB623045
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29616475|gb|CB621487.1|CB621487
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|38471630|gb|CF955761.1|CF955761
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACA
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACA
EST: gi|44679309|gb|CR292743.1|CR292743
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCTACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58611062|gb|CK038774.1|CK038774
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29629389|gb|CB634398.1|CB634398
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACACATCGTGTTTTGGATCACCCAACAAGGCCAACTCATACA
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACA-ATCG-GTTTTGGATCACCCAACAAGGCCAACTCATACA
EST: gi|29658985|gb|CB655260.1|CB655260
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|84117357|gb|CD151124.1|CD151124
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58693155|gb|CK081842.1|CK081842
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58607338|gb|CK035371.1|CK035371
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58605541|gb|CK033574.1|CK033574
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|700946|gb|D47237.1|D47237
EST:     CTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29624781|gb|CB629792.1|CB629792
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58691917|gb|CK080604.1|CK080604
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|44679342|gb|CR292776.1|CR292776
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29621963|gb|CB626974.1|CB626974
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29627380|gb|CB632391.1|CB632391
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29617346|gb|CB622358.1|CB622358
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29656978|gb|CB653253.1|CB653253
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58611032|gb|CK038744.1|CK038744
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58612671|gb|CK040383.1|CK040383
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29614101|gb|CB619114.1|CB619114
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29616061|gb|CB621073.1|CB621073
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|300215739|gb|HO088365.1|HO088365
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|33793713|gb|CF322739.1|CF322739
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29658330|gb|CB654605.1|CB654605
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|33381650|gb|CF196993.1|CF196993
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58656118|gb|CK044798.1|CK044798
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCAGGCAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29686071|gb|CB682346.1|CB682346
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29677194|gb|CB673469.1|CB673469
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29614136|gb|CB619149.1|CB619149
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|29642621|gb|CB647628.1|CB647628
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58608832|gb|CK036865.1|CK036865
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
EST: gi|58609714|gb|CK037747.1|CK037747
EST:     CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAG                         GTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC
genomic: CCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 71 (downstream exon)
Score: 261

GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcc ... ctctttttagGTGACCACCACAATCGGTTTTGGATCACCCAACAAGGCCAACTCATACAGCGTCCACGGAAGTGCTTTGGGTACCAAAGAGGTTGAAGCAACCAGAGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATACAATCTGGGTTAAGAATGGAAACGATGGCTATGATGAGATTCGTGCCGCCATTAAGGAAGCAAAGGCGGTAACTGACAAGCCAACACTAATCAAGgttagattcctgtacattctgttatgctgtgttttgttatagagcttatcatatttagccaaaatgtactctttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG