1 5' 3' |
CCACGTTCCCCTGGGCGCCGACGCGCCGCTCGGGGACTTCTCCGAGGGCTGCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAGgtcccacctcttcctcctcctcctcctcctcccgcgtagcggctgtcgatcttgtccgccaccgcgcccgagcagccgtcgacaacggaattgctggcgc...
species | Oryza sativa |
transcript | LOC_Os06g03514.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAG GAGAAGTTCCAGAAGTATCTTTCCGGTGAAGGCCAGAGGCTCAGGCAGCAGEST: gi|86541987|gb|CI182193.1|CI182193
genomic: GCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAGgtcccacctc ... attctggcagGAGAAGTTCCAGAAGTATCTTTCCGGTGAAGGCCAGAGGCTCAGGCAGCAG
EST: GCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAG GAGAAGTTCCAGAAGTATCTTTCCGGTGAAGGCCAGAGGCTCAGGCAGCAG
genomic: GCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAGgtcccacctc ... attctggcagGAGAAGTTCCAGAAGTATCTTTCCGGTGAAGGCCAGAGGCTCAGGCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACGTTCCCCTGGGCGCCGACGCGCCGCTCGGGGACTTCTCCGAGGGCTGCGTGCTCCACCACCTCCGCCGTCTCTCCGTTGACATCCCCGGCCGCCAGgtcccacctcttcctcctcctcctcctcctcccgcgtagcggctgtcgatcttgtccgccaccgcgcccgagcagccgtcgacaacggaattgctggcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggctg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggcg