Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgttcgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag

Basic information

species Oryza sativa
transcript LOC_Os05g06760.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 6
GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgtt-cgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag
 |||||||| || |||||||| || ||||| ||||||||||||||||||||||||||||| || |  ||| | ||||| |||||||| || ||    |||||| | |||   | |||  |   ||  ||    | | | ||  |||    ||||||   || ||||| || |  | ||| ||    |||   ||  |   |  |                       
ACAGCACCACTCGAAGCTTGTTTGTTACATCACCAAGGAGCTCATGGACACTGAGAACCCGCCTCAGGTTCTGCCGAACGGCTATGTCTACAGTGAGAAGgtacacactcaaacctgtgct--gttgttgtt-tgtaaagc--atc----agttca--gttcaaaccatcttggcttagcgct-tgctgtatatttgcccccag-----------------------

upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA10G43910.1 (Glycine max), 5'ss of exon 6
GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgttcgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag
|||||| || || |||||||| ||||| ||||| |||||| | ||||||||||||||||||||||  || || || ||||| |||||||||||||| |||||     ||   |    |   |  || ||  | | ||    | || |   |   |||| ||       |  ||  |  | |    | |                                      
GCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCACCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgt---ccctgttattctagttat-tcttttagatgtt----ccatgtataaag-catattttgtttattattttttgctcctttgcag--------------------------------------

upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA20G38660.1 (Glycine max), 5'ss of exon 6
GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtcattacggtattatgccgatctgcgagttcatacttgaaaccgtcgttcgtagtgccacactgataatccgttgctggctgttcattctatcctacctcag
|||||| || || |||||||| ||||| ||||| |||||| | ||||||||||||||||| ||||  || || || ||||| |||||||||||||| |||||     ||   |  | |   |  || ||  | | ||    | || |   |   |||| ||       |  ||  |  | |    | |                                      
GCAGCATCACTCTAAGCTTGTTTGCTATATAACTAAGGAGTTAATGGACACTGAGAACCCGCCGCAAGTCTTGCCCAATGGATATGTTTATAGCACTAAGgt---ccctgttattttagatat-tcttttagatgtt----ccatgtataaag-catattttgtttattattttttgctcctttgcag--------------------------------------

upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT3G55070.1 (Arabidopsis thaliana), 5'ss of exon 6
GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaactacgagctgaaccaggtca----ttacggtattatgccgatctgcgagttcatacttgaaaccgtcgttcgtagtgccacactga--taatccgttgctggctgttcattctatcctacctcag-------------------------------
||||||||||||||||||||| ||||| ||  | |||||||| |||||||| ||||||||||| |  ||  | || |||||||| || || |||||||||||   |         || || |  |||     |  | | || | |   | |  || |   |   |   | | |  |  ||     ||  ||    ||  | |||        || |   |    ||| |                                  
GCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAACCCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGgtttgattctgttcttgtacaacttcagcttctctgttctttttctctttttagaatctttttctattagcttgatcagttacatcagtctatcctatacagttcaaaaaatttaaagttgggttactttttttatttatttgatgggtaaatgaacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88253951|gb|CI352577.1|CI352577
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|13807456|gb|AU181965.1|AU181965
EST:     CTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|58680296|gb|CK068983.1|CK068983
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|89188363|gb|CI115612.1|CI115612
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|87031181|gb|CI259761.1|CI259761
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86496175|gb|CI138808.1|CI138808
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86911533|gb|CI317684.1|CI317684
EST:     TCCCGAATGGCTATGTTAATAGCACCAAG                         GCTCTTAATGAGATGCCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: TCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86522436|gb|CI162642.1|CI162642
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|38483136|gb|CF966938.1|CF966938
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGC
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGC
EST: gi|88437772|gb|CI533729.1|CI533729
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88519449|gb|CI447103.1|CI447103
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86509560|gb|CI152193.1|CI152193
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86251784|gb|CI018976.1|CI018976
EST:     TGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: TGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86260556|gb|CI066429.1|CI066429
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|89188080|gb|CI115329.1|CI115329
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86432270|gb|CI085881.1|CI085881
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88437213|gb|CI526362.1|CI526362
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88199170|gb|CI199020.1|CI199020
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|87018975|gb|CI256860.1|CI256860
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88989214|gb|CI042327.1|CI042327
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86603645|gb|CI112405.1|CI112405
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88253446|gb|CI352072.1|CI352072
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88249284|gb|CI249133.1|CI249133
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|33380570|gb|CF195913.1|CF195913
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|12405359|gb|AU166960.1|AU166960
EST:     CTGAGAACCCNCCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|29626430|gb|CB631441.1|CB631441
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88250766|gb|CI348996.1|CI348996
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88279556|gb|CI400556.1|CI400556
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGGCAAGGTTACATGCCCTC-
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGA-GGCAAGGTTACATGCCCTCG
EST: gi|86478019|gb|CI120652.1|CI120652
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88836032|gb|CI371137.1|CI371137
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATACCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86895403|gb|CI331281.1|CI331281
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|15849371|gb|BI797647.1|BI797647
EST:     CTGAGAACCC-CCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCACAGAAGAATGGAGGCCAAGGTTACATGCCCTC
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCA-AGAAGAATGGAGGC-AAGGTTACATGCCCTC
EST: gi|300215580|gb|HO088206.1|HO088206
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|89167966|gb|CI109170.1|CI109170
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88990220|gb|CI107646.1|CI107646
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88280960|gb|CI402158.1|CI402158
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86863082|gb|CI344842.1|CI344842
EST:     CTGAG-ACCCACCGCTCGTTTTCCCGAATGGCTATTTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86863051|gb|CI344826.1|CI344826
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCG-
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86838930|gb|CI330346.1|CI330346
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86427542|gb|CI072639.1|CI072639
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|89187712|gb|CI115158.1|CI115158
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCCAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|89188472|gb|CI115721.1|CI115721
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88449880|gb|CI529859.1|CI529859
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAAGGGCTATNTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|3766555|gb|AU030665.1|AU030665
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86866747|gb|CI343554.1|CI343554
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86414065|gb|CI068272.1|CI068272
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88989290|gb|CI043789.1|CI043789
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86483908|gb|CI126541.1|CI126541
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88227774|gb|CI227254.1|CI227254
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86538252|gb|CI178458.1|CI178458
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|86867179|gb|CI343921.1|CI343921
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
EST: gi|88990942|gb|CI108329.1|CI108329
EST:     CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAG                         GCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG
genomic: CTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 62 (upstream exon), 73 (downstream exon)
Score: 35

GCAGCACCATTCAAAGCTTGTCTGCTACATAACCAAGGAGCTCATGGACACTGAGAACCCACCGCTCGTTTTCCCGAATGGCTATGTTTATAGCACCAAGgtaaaaacta ... cctacctcagGCTCTTGATGAGATGGCCAAGAAGAATGGAGGCAAGGTTACATGCCCTCGGACAGGAGACATCTGCAACTACACCGATCTCGTCAAGGCCTACATATCAT




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