Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGCGGCCCCTACCCCGCCGACCAGTCGTCAAGGATCTCTCCGGCTCCTTCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaaccactactagactggttttctgaatcgaattgatgaatttgtgcttcaaattgaacttcctgtgagtgtagcgtggccctgtccccttcc...

Basic information

species Oryza sativa
transcript LOC_Os04g58280.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659974|gb|CB656249.1|CB656249
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGG
EST: gi|29661194|gb|CB657469.1|CB657469
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29680838|gb|CB677113.1|CB677113
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29661743|gb|CB658018.1|CB658018
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29686850|gb|CB683125.1|CB683125
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|218496284|gb|FG949322.1|FG949322
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29662154|gb|CB658429.1|CB658429
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29629720|gb|CB634729.1|CB634729
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58687250|gb|CK075937.1|CK075937
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29658906|gb|CB655181.1|CB655181
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29656111|gb|CB652386.1|CB652386
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29636735|gb|CB641744.1|CB641744
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACAGATGGGGAGGTGCCGTTGTATTGCGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29659373|gb|CB655648.1|CB655648
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29657040|gb|CB653315.1|CB653315
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29656580|gb|CB652855.1|CB652855
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTC
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTC
EST: gi|29628250|gb|CB633261.1|CB633261
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29661707|gb|CB657982.1|CB657982
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58694368|gb|CK083055.1|CK083055
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29656839|gb|CB653114.1|CB653114
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29674365|gb|CB670640.1|CB670640
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29662008|gb|CB658283.1|CB658283
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29644604|gb|CB649611.1|CB649611
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29662345|gb|CB658620.1|CB658620
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|88411158|gb|CI564279.1|CI564279
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|88411158|gb|CI564279.1|CI564279
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58609124|gb|CK037157.1|CK037157
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29689268|gb|CB685543.1|CB685543
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29646101|gb|CB651108.1|CB651108
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29636390|gb|CB641399.1|CB641399
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29662436|gb|CB658711.1|CB658711
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29669515|gb|CB665790.1|CB665790
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58682153|gb|CK070840.1|CK070840
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29659053|gb|CB655328.1|CB655328
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29659264|gb|CB655539.1|CB655539
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29636453|gb|CB641462.1|CB641462
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58695873|gb|CK084560.1|CK084560
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58696084|gb|CK084771.1|CK084771
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29617684|gb|CB622696.1|CB622696
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGACTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGATGTATTGGGGG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGG
EST: gi|29670632|gb|CB666907.1|CB666907
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58682359|gb|CK071046.1|CK071046
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29659943|gb|CB656218.1|CB656218
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29682018|gb|CB678293.1|CB678293
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29657036|gb|CB653311.1|CB653311
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29656109|gb|CB652384.1|CB652384
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|218494680|gb|FG947450.1|FG947450
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAG
EST: gi|29662155|gb|CB658430.1|CB658430
EST:     TCGGCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGCTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29646783|gb|CB651790.1|CB651790
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58593139|gb|CF991447.1|CF991447
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGNCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCG
EST: gi|29674394|gb|CB670669.1|CB670669
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29661490|gb|CB657765.1|CB657765
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29657995|gb|CB654270.1|CB654270
EST:     TCGACTTCGTCGTCTTCCACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCCCGGCCGATGG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGG
EST: gi|29666730|gb|CB663005.1|CB663005
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29667930|gb|CB664205.1|CB664205
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29662358|gb|CB658633.1|CB658633
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58683395|gb|CK072082.1|CK072082
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAG
EST: gi|29662232|gb|CB658507.1|CB658507
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29665050|gb|CB661325.1|CB661325
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29671904|gb|CB668179.1|CB668179
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29680962|gb|CB677237.1|CB677237
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29655767|gb|CB652042.1|CB652042
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29669120|gb|CB665395.1|CB665395
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29656357|gb|CB652632.1|CB652632
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29664642|gb|CB660917.1|CB660917
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29657310|gb|CB653585.1|CB653585
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29659314|gb|CB655589.1|CB655589
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29637012|gb|CB642021.1|CB642021
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|58685271|gb|CK073958.1|CK073958
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATCGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
EST: gi|29660793|gb|CB657068.1|CB657068
EST:     TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCGCCGCCCTG                         AGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG
genomic: TCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaa ... cgcgatgcagAGTACGGATGGGGAGGTGCCGTTGTATTGGGGGATCGCGGCGGATGGGTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCGCGGCCCCTACCCCGCCGACCAGTCGTCAAGGATCTCTCCGGCTCCTTCGCCTTCGTCGTCTTCGACAACAAGTCCGGCGCCGTCTTCCCCGCCCTGgtaatttaaaccactactagactggttttctgaatcgaattgatgaatttgtgcttcaaattgaacttcctgtgagtgtagcgtggccctgtccccttcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc