Sequence
atgc intronic sequence ATGC exonic sequencegtgtggccgtgtggcaaatgttgacaaaattaatgaatcttactaaactctcatttatattgtatcatgtgcagAAGAGGAGTTCCACAAGTCACTCGATGAGCTTCTTAGTACTTTAAATATCACTGAGCCATTCTTCTTAGTTGTCCAG
Basic information
species | Oryza sativa |
transcript | LOC_Os04g55180.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g55180.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G117531_T04 (Zea mays), 3'ss of exon 4
-------------------gtgtggccgtgtggcaaatgttgacaaaat-----taatgaatcttacta--aactctcatttatattgtatcatgtgcagAAGAGGAGTTCCACAAGTCACTCGATGAGCTTCTTAGTACTTTAAATATCACTGAGCCATTCTTCTTAGTTGTCCAG
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tactttattgagtgaattccaattcctttaaaatgaagggatccaaacgccccgtaaaggaatttgctatgaagacttaggtatattgtatcatttgtagAGGACGAATTTCACAAGGCATTTGATGATCTTCTTGGTACTCTAAATATCACCGAGCCCTTCTTCTTAGTTGTCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29678503|gb|CB674778.1|CB674778EST: ATTTGGGTTCAGTGATATGCCACAGCCCGGATATGGATTCGACTACACAG AAGAGGAGTTCCACAAGTCACTCGATGAGCTTCTTAGTACTTTAAATATCA
genomic: ATTTGGGTTCAGTGATATGCCACAGCCCGGATATGGATTCGACTACACAGgtgtggccgt ... tcatgtgcagAAGAGGAGTTCCACAAGTCACTCGATGAGCTTCTTAGTACTTTAAATATCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgacaaaattaatgaatcttactaaactctcatttatattgtatcatgtgcagAAGAGGAGTTCCACAAGTCACTCGATGAGCTTCTTAGTACTTTAAATATCACTGAGCCATTCTTCTTAGTTGTCCAG
tactaaa putative branch site (score: 1)
aaaattaatgaatctt TA-rich tract