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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttactacattatttagatcataacaaaatccacctgctagttgacattacgagatgtcctagaaggcaaactaaatgtgctaaaatctgtgagatgcagTGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGA

Basic information

species Oryza sativa
transcript LOC_Os04g54190.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86496206|gb|CI138839.1|CI138839
EST:     TGTTGGAACCTA                         TGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATC
genomic: TGTTGGAACCTAgtaaggctct ... tgagatgcagTGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattacgagatgtcctagaaggcaaactaaatgtgctaaaatctgtgagatgcagTGGCTACATCTCTCCAGAGTACGCAATGGAGGGCAAATTCTCTGAGAAATCAGACATCTTCAGTTTCGGCGTGTTGATCCTAGAGATTGTGAGCGGACGA
                                 tgctaaa  putative branch site (score: 2)
                       aaactaaat  TA-rich tract