1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatatgtcttacattttgttcaccctatcagtgtctcatgcccatagtgtcaaaacaaatcatcttacatttcattttgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTG
species | Oryza sativa |
transcript | LOC_Os04g52840.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTEST: gi|88376882|gb|CI639207.1|CI639207
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTEST: gi|58655645|gb|CK044325.1|CK044325
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTEST: gi|88468967|gb|CI696979.1|CI696979
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
EST: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGG GGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
genomic: TTAGTGGGGCAAATAAGATTGGAGAGGGTGGTTTTGGCTCTGTGTTCAGGgtaaatatgt ... tgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACT
gtctcatgcccatagtgtcaaaacaaatcatcttacatttcattttgttaatcagGGAGTGCTTAGAGATGGGACAACCGTTGCCGTAAAGGTGCTGTCTGCTACTTCAAGACAAGGCGTCCGAGAGTTCTTGACTGAACTTACAGCAATTTCTG
atcttac putative branch site (score: 8)
tttcatttt CT-rich tract
atttcattttgttaat TA-rich tract