1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AGTGATTCGGCTCCCATGGCTCTCTCTGTGCTCCTGCTGCTTCTTGCAGCGGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagattctctctttttttcaaaactgttatctccgacgatggagctatctcgaaattcagttaaatcaatacgtttttggtttcctcttttccttc...
species | Oryza sativa |
transcript | LOC_Os04g52640.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88380887|gb|CI634912.1|CI634912
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88733416|gb|CI756593.1|CI756593
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88360881|gb|CI625187.1|CI625187
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: TTGCGTCAGGCTCAGAAAGCACCGACGGCCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88589472|gb|CI707355.1|CI707355
genomic: TTGC-TCAGGCTCAGAAAGCACCGACGG-CGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88368820|gb|CI649411.1|CI649411
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88326454|gb|CI659885.1|CI659885
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88401383|gb|CI585939.1|CI585939
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCACAAGGCGGAATGGAEST: gi|88369657|gb|CI582852.1|CI582852
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGACAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88389754|gb|CI626523.1|CI626523
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88421038|gb|CI566879.1|CI566879
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88765430|gb|CI774524.1|CI774524
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88425212|gb|CI564729.1|CI564729
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAEST: gi|88396823|gb|CI577972.1|CI577972
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGATTCGGCTCCCATGGCTCTCTCTGTGCTCCTGCTGCTTCTTGCAGCGGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagattctctctttttttcaaaactgttatctccgacgatggagctatctcgaaattcagttaaatcaatacgtttttggtttcctcttttccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccgacg