Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTACGGTGCACCGGCTCAAACACCTAAAGAGCAAATGTTCAGTGAGCTTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAGgtactcgtgttctttccctctctgtgtgtgtgtgtatgtgtgtgtgtttgcaaaaataccatgtgcattaagcacagcatgccatcatctgcacaataat...

Basic information

species Oryza sativa
transcript LOC_Os04g52479.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52479.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G033724_T02 (Zea mays), 5'ss of exon 3
GTACTACGGTGCACCGGCTCAAACACCTAAAGAGCAAATGTTCAGTGAGCTTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAGgtactcgtgttctttccctctctgtgtgtgtgtgtatgtgtgtgtgtttgcaaaaataccatgtgcattaagcacagcatgccatcatctgca------caataat
|||||||||||| || |||||||| || |||| |||||| ||||  ||||| || |||||||| ||||||||||| ||||||||||| || ||||||||||||| |   || | | | | ||||  | ||  ||  | |  || | | | ||    || |||||| |||||||  ||||||| | ||| || |      ||    |
GTACTACGGTGCTCCAGCTCAAACTCCAAAAGTGCAAATATTCACAGAGCTCGTGGATAAGTTGTGTGGCAGTGATGAATGTATTGGCTCCGGCTCTCAGgtacac---ttttgttcttttctgcat-tgattgattttcagtatatatccatc--tatcatgtggattaagcctagcatgctaccatgtggaatcgtgcagcggt

upper sequence: LOC_Os04g52479.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G102346_T01 (Zea mays), 5'ss of exon 3
GTACTACGGTGCACCGGCTCAAACACCTAAAGAGCAAATGTTCAGTGAGCTTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAGgtactcgtgttctttccctctctgtgtgtgtgtgtatgtgtgtgtgtttgcaaaaataccatgtgcattaagcacagcatgccatcatctgcacaataat------------
||||||||||||||| |||||||  || |||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||| |   || | | | | ||||  | ||  || || |    || |        ||| ||||||  |||||   ||||||| | ||| || ||                  
GTACTACGGTGCACCAGCTCAAAATCCAAAAGTGCAAATGTTCACTGAGCTTGTTGATAAGTTGTGTGGCAGTGATGAATGTATTGGCTCTGGCTCTCAGgtacac---ttttgttcttttctgcat-tgattgaatttcaaagtat--------atatcatgtggcttaagggtagcatgctaccatgtggacttgtgcagctgtgcacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58659200|gb|CK047880.1|CK047880
EST:     TTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAG                         GTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGC
genomic: TTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAGgtactcgtgt ... attgtttcagGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGC
EST: gi|58605986|gb|CK034019.1|CK034019
EST:     TTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAG                         GTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGC
genomic: TTGTTGATAAGTTATGTGGCAGTGACGAATGTATTGGTTCAGGCTCTCAGgtactcgtgt ... attgtttcagGTTGCAAGCCATGAAACTTTTGGTACTTTGGGTGCAATTGTGAAACGGCGC