1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGGCTAGGAGGAGGATAGGGTGAGGCGGCTCTTCACTTCTTCAGAGGTGGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggctcgagatcctgccaagatcagctccttggcctgggggtggaggacaggtggtatcttgtgccgtctttcttgagttcttgcggtggttttc...
species | Oryza sativa |
transcript | LOC_Os04g52479.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAG GTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTCEST: gi|58596278|gb|CK006806.1|CK006806
genomic: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggct ... tctataatagGTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
EST: GGCAGGCCATTCTGCTTCTCTCGCCATTGTAGTGCTCCGGGTGAGGTGAG GTTCGCGGACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTCEST: gi|58669472|gb|CK058158.1|CK058158
genomic: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggct ... tctataatagGTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
EST: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAG GTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTCEST: gi|58664855|gb|CK053541.1|CK053541
genomic: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggct ... tctataatagGTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
EST: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAG GTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTCEST: gi|58670972|gb|CK059658.1|CK059658
genomic: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggct ... tctataatagGTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
EST: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCC----G-GGTGAG GTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
genomic: GGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggct ... tctataatagGTTCGCAAACTGTTCAGCACAATGAAGCCTTCGGACGATAAGGCGCAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTAGGAGGAGGATAGGGTGAGGCGGCTCTTCACTTCTTCAGAGGTGGCAGGCCATTCTGCTTCTCTCGCCATTGGAGTGCTCCGGGTGAGGTGAGgtgagcggctcgagatcctgccaagatcagctccttggcctgggggtggaggacaggtggtatcttgtgccgtctttcttgagttcttgcggtggttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggtgg