1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTTGTTGTATTCTGTGTTGCTCTGGCTTGCATCATTGGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttttcaagtagagataaattggttatgtacatgcagaagatgtacataattttatatgacattcatgcaatagataaccttttgcaagatcttattggaatcag
species | Oryza sativa |
transcript | LOC_Os04g48050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGEST: gi|38479871|gb|CF963960.1|CF963960
genomic: CTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
EST: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGEST: gi|27577289|gb|CA999983.1|CA999983
genomic: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
EST: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGEST: gi|29663345|gb|CB659620.1|CB659620
genomic: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
EST: CTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGEST: gi|58683789|gb|CK072476.1|CK072476
genomic: CTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
EST: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGGEST: gi|88405109|gb|CI685558.1|CI685558
genomic: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
EST: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAG GAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
genomic: GTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttt ... ttggaatcagGAAGGAGCGTCAGAAGATGATATTCGCCAAATTCCAAGATACAAATTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTTGTATTCTGTGTTGCTCTGGCTTGCATCATTGGTATTGCTGTATGTTGCTGCCTACCTTGCATTATAGCTATTCTCTATGCGGTTTCTGATCAGgtatggcttttcaagtagagataaattggttatgtacatgcagaagatgtacataattttatatgacattcatgcaatagataaccttttgcaagatcttattggaatcag
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