Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACTCGGGAATCTGATGAGCCACCATTGCTATCTgttagtaccttaacttttatatgcacttccccattctgctcttttcaaagacgagttaaactgagtagtagttatttttccag

Basic information

species Oryza sativa
transcript LOC_Os04g45190.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547307|gb|CA765509.2|CA765509
EST:     ACAACTCGGGAATCTGATGAGCCACCATTGCTATCT                         GCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAG
genomic: ACAACTCGGGAATCTGATGAGCCACCATTGCTATCTgttagtacct ... atttttccagGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAG
EST: gi|25807588|gb|CA763549.1|CA763549
EST:     ACAACTCGGGAATCTGATGAGCCACCATTGCTATTT                         GCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAG
genomic: ACAACTCGGGAATCTGATGAGCCACCATTGCTATCTgttagtacct ... atttttccagGCTACAAGAGCACACAAGGATGCAGAAGATGTAACATCTGATTCTGAG