Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86906816|gb|CI291216.1|CI291216EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|33690626|gb|CF318865.1|CF318865EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|88736139|gb|CI759647.1|CI759647EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|88760148|gb|CI769704.1|CI769704EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|27547474|gb|CA765642.2|CA765642EST: CAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|58587720|gb|CF986028.1|CF986028EST: AGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTTG
genomic: AGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|86847416|gb|CI286996.1|CI286996EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|58602988|gb|CK013516.1|CK013516EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|33813671|gb|CF332725.1|CF332725EST: CAGGTTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|88328215|gb|CI651221.1|CI651221EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|86595822|gb|CI290096.1|CI290096EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|88298739|gb|CI565936.1|CI565936EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|569049|gb|D39898.1|D39898EST: CAGATTTGGCAGGACAGGGGACAGGCTCGNTCAAGGCATCAAAGGACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAG
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAG
EST:
gi|87035215|gb|CI189837.1|CI189837EST: GGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
genomic: GGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGG
EST:
gi|86905613|gb|CI287178.1|CI287178EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCA
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCA
EST:
gi|4878785|gb|AU063084.1|AU063084EST: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATG TGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCT
genomic: CAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
74 (upstream exon),
67 (downstream exon)
Score:
56GCCGCCTACCACGCCGAGGCGAAAAGCTCTGCAACCGCGCGTACGAGCTCCAGATTTGGCAGGACAGGGGACAGGCTCGCTCAAGGCATCAAAGAACATGgtacgttctt ... tgatttgcagTGACTCTAGGACCAAAACTGTACGAGACCATGAAAGGCAAGCTGACGCTGGGCGCGAGAATCCTCCAGGCAGGCGGCGTGGAGAAGGTCTTCCGCCGGTG
<
<
<