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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACGAGGGTCTCCTCTCGTCTGGAATCATGGGCTTATATATTGTGTTCCTTTGTTGGTCGGCGCTCCACAGgtactaatttttgtactcactctggtcacttttaacttaactcttctgacgtgttttatgatcacttttcatattgtag

Basic information

species Oryza sativa
transcript LOC_Os04g42720.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g42720.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G018756_T02 (Zea mays), 5'ss of exon 7
GTCAACGAGGGTCTCCTCTCGTCTGGAATCATGGGCTTATATATTGTGTTCCTTTGTTGGTCGGCGCTCCACAGgtactaatttttgtactcactctggtcacttttaacttaactcttctgacgtgttttatgatcactt-----ttcatattgtag-------------------------------------------------------------------------------------------------------
|| ||||||||||| ||||| ||||| |||||| | | ||||||||| |||||||||||||| || ||||||||||  || |   || |    ||      | |   ||  |     || || | |   |    | |  ||     | |||| || |                                                                                                        
GTTAACGAGGGTCTTCTCTCTTCTGGGATCATGAGTTCATATATTGTTTTCCTTTGTTGGTCTGCACTCCACAGgt--tagtc--tgcatcacctggaactattgaaaaggttgtaattttggcattcctaggaagcgtttccacttccataatgcaaaatattctgtgctaatatttctttttccattcactgttctgcaaacatagccttgtatagtgcagtttgcttgatgttaatttcatactatgcgcatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86251365|gb|CI055498.1|CI055498
EST:     GCGCTCCACAG                         CGAACCACAAACTGGAAAGTGCCATACTCGGCTGATATTTGCCAATGATGG
genomic: GCGCTCCACAGgtactaattt ... catattgtagCGAACCACAAACTGGAAAGTGCCATACTCGGCTGATATTTGCCAATGATGG