1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctggaacactgcatctcctctcactctcacatgcttgtaatttaacttagctctttgtccttattattttcgttgtttgtctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACAC
species | Oryza sativa |
transcript | LOC_Os04g40840.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|29682940|gb|CB679215.1|CB679215
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|29666831|gb|CB663106.1|CB663106
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|29682941|gb|CB679216.1|CB679216
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|27577984|gb|CB000679.1|CB000679
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|88226125|gb|CI226041.1|CI226041
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: GAACTCGTGAGNCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|218500846|gb|FG954979.1|FG954979
genomic: GAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|27576345|gb|CA999039.1|CA999039
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|88983019|gb|CI250623.1|CI250623
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: TTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|33810913|gb|CF331347.1|CF331347
genomic: TTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACEST: gi|87035159|gb|CI189781.1|CI189781
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
EST: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAG GATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
genomic: ATTTAGGCTTGAAGTGCCGAGATGTTAGAACTCGTGAGGCGGGAATTCAGgtctggaaca ... ctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGAC
tgtaatttaacttagctctttgtccttattattttcgttgtttgtctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACAC
atttaac putative branch site (score: 27)
tttgtcttt putative PPT
ttattattttcgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggaacactgcatctcctctcactctcacatgcttgtaatttaacttagctctttgtccttattattttcgttgtttgtctttatgtagGATATCCATCACAAAATTAGACCTGACGAAGTAGAGCTTGTTAGGCGTGACTATGCTGCAAATGAGGGCTGGGAGACCTTTCTCTCATACGAGGATACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT