Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttttcttgctaaaattgaaagtttgattgaaactgaaataatgtgacggaaaagttgatgaaggctaaggctgcgttcaggaggaagggttgggcctggcacgcaaaacggagcacgcattattgcatgattaattaaatattagctatttttttaaaaaaatagATTAATTTGATTTTTTAA

Basic information

species Oryza sativa
transcript LOC_Os04g37800.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcacgcattattgcatgattaattaaatattagctatttttttaaaaaaatagATTAATTTGATTTTTTAA
                  gattaat  putative branch site (score: 3)
                                      ttttttta  putative PPT
                atgattaattaaatat  TA-rich tract