1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctactttgttacccactttaactaacgaatatatatatatattttgcattgcctttttcttttcttttttttcattactaattgatattgaaacgtgcagGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTCTTGCGAAGGAAGAGGAGCAC
species | Oryza sativa |
transcript | LOC_Os04g32480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAG GTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCEST: gi|86529935|gb|CI170141.1|CI170141
genomic: CTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAGgtatagacaa ... aaacgtgcagGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGC
EST: CTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAG GTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGC
genomic: CTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAGgtatagacaa ... aaacgtgcagGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGC
gcattgcctttttcttttcttttttttcattactaattgatattgaaacgtgcagGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTCTTGCGAAGGAAGAGGAGCAC
tttttcttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactttgttacccactttaactaacgaatatatatatatattttgcattgcctttttcttttcttttttttcattactaattgatattgaaacgtgcagGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTCTTGCGAAGGAAGAGGAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - -aactaac