Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG

Basic information

species Oryza sativa
transcript LOC_Os04g30730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G010599_T03 (Zea mays), 3'ss of exon 2
--gtgcgcctccttcct---ccttctctctcgctcgtttgttggtgtggct--ggatctcgctca-cgggttcttggggtggtgaattttttt-tcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG----
  |   || |  |  ||   ||  |  |||  |||||||||     |||||  | |||  ||| | | |  || |||    |||  ||  | | | |||||||| | ||||||||||| ||||| |||||||| || || |||||||||||||||||| |||||||| | |||||||||||||||||||  || ||||||    
gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagcaagATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCGCTCG

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G043279_T02 (Zea mays), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctca-cgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG----
|||||   ||| |   ||    | || |  |||  |   ||   ||| |     || |   | |||     ||         || |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||     
gtgcgta-cctgcaatctctattttctcctgttattctctgctcctgaactcgactgaatcgattcgaattgtatccggcccttcttc--agcaagGTGGTGCGCACCTCGATCGCGCGCGTGCTCACAGTGATCTCGCAGAAGCAGAAGTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCG

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AC206642.4_FGT001 (Zea mays), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcg---ctcacgggttcttggggtggtgaatttt-ttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
|||||    |  |   |  |  | |  ||| ||| |     |||||     |||    | ||    || |||    |||  ||    | | |||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||| |||||||| | |||||||||||||||||||  |||||||||
gtgcgttgacggcgctcgcccttgttcctcttttatcaaactggctttgcttcggacttaacttaatcgtggatccgtggtttccactcttgcagCAAGGTTGTGCGCACCTCCATCGCGCGCGTGCTGACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTGCTCCCG

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G043279_T03 (Zea mays), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctca-cgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
|||||   ||| |   ||    | || |  |||  |   ||   ||| |     || |   | |||     ||         || |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| 
gtgcgta-cctgcaatctctattttctcctgttattctctgctcctgaactcgactgaatcgattcgaattgtatccggcccttcttc--agCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTCACAGTGATCTCGCAGAAGCAGAAGTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCC

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G010599_T02 (Zea mays), 3'ss of exon 2
--gtgcgcctccttcct---ccttctctctcgctcgtttgttggtgtggct--ggatctcgctca-cgggttcttggggtggtgaattttttt-tcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
  |   || |  |  ||   ||  |  |||  |||||||||     |||||  | |||  ||| | | |  || |||    |||  ||  | | | |||||||| | ||||||||||| ||||| |||||||| || || |||||||||||||||||| |||||||| | |||||||||||||||||||  || ||||||
gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G43770.1 (Glycine max), 3'ss of exon 2
gtgcgcctcctt-cctccttctctctcgctcgtttgttggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
||     || |   ||  |  |  |||| |  | | |||   | |  || |   | | | | ||| ||  |    |||  |||     |||||||||||||| |       || || |  ||  |||||||||| || |||||||||||||| ||| ||||||| || |||||||| ||||      | || 
gtaataatcttaatctaataattcctcgtttctcttttgcctttga-ggtttgtgtttatgtgttattttgaaattgaggttt-----gcagCAAGGTGGTGAGGTTGAACATTGCCCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCCGCGTTGAGGGATGCCTACAAGAACAAGAAGTACTTGCCT

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G40700.1 (Glycine max), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtg--tggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
|| |    |||  ||| |||        ||  |  ||  |   ||| | ||  | ||| |||  || |    | | |   | | |    | ||||| |||||  |    ||||| ||||  |||||||||||||| || |||||||| || || |||||||| ||||| |||||||||||||     || || 
gtaccttccctctctctttcatatcaaatccctaattcctaattggattgaaat-gcttacgaatt-tgaatgcgtttgttgtgtggatgtagCAAAGTGGTTAGGCTTTCGATAGCGCAGGTGCTGACGGTGATTTCCCAGAAGCAAAAAGCAGCGCTGAGAGAGGCTTACAAGAAGAAGAAATACCTTCCT

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA20G38480.1 (Glycine max), 3'ss of exon 2
gtg-cgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
||     |    ||    |    | | | | |||| |   | ||    | |   | | |    || ||  |      ||||    || |||| ||||||||| |       || || |  ||  |||||||||| || |||||||||||||| ||| ||||||| || |||||||| ||||      | || 
gtaataacctaatctaaataaatttttgtttgttt-tgcctatgaggtgtttgtgttaattacttattttga-----aattggggtttgcagAAAGGTGGTGAGGTTGAACATTGCCCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCGTTGAGGGATGCCTACAAGAATAAGAAGTACTTGCCT

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA10G05270.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatct-cgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
                                                           |     |   |     | |           | | |   | |   |  || |      | |  |   ||   |  |  ||||||||| |||||||||||||| |    ||||| ||||  ||  ||||||| || || || |||||||| ||||||||||| ||||| |||||||||||||      | || 
gtattgtagtgattattgttatgcgggaatcgcgttttgtaaacgaaatggcgtttgaatatatatatatatatatacatatatatatatatatatatatatatatatatgtatgtatgtatgtatgtatttttttatttttttt-gcagCAAGGTGGTGAGGCTTTCGATAGCGCAGGTTTTGACGGTTATTTCCCAAAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCC

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA13G19650.1 (Glycine max), 3'ss of exon 1
-----------------gtgcgcctccttcctccttctctctcgctcgtt--tgttggtgtggctggatctcgctc-----acgg--------gttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
                          |    |   | | ||  | |  ||  | || || ||   | ||| || |      |||         |   ||    | ||   |||||||| |||| ||||||||| |    ||||| ||||  ||  ||||||| || || ||||||||||| ||||||||||| ||||| |||||||||||||      | || 
gtaccaactcacttccaacattttctcagtgtttgtttgtcctgattattattattagtatgcgggaatcgcgttttgtgaacgaaacgaaacggcgttttaattgtttttttttttttgcagTAAGGTGGTGAGGCTATCGATAGCGCAGGTTTTGACGGTTATTTCCCAGAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCC

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G04730.1 (Glycine max), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtgg---------ctggatctcgctca--cgggttcttggggtggtgaatttttttt---cgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
      || |||  || |  | || |  |  ||   ||| ||            ||  | |    ||  |    | |    ||| |   || | | |    ||||||| ||||| ||    ||||| ||||| |||||||| ||||| || |||||||| ||||| ||| ||||||| || |||||||||||||     || || 
-----tctactttttcatggtgtcaccatgattctgtggagtaaaatttattcttgtgtgttatccaaactcactatgaatgtgctttgttgtgtgtggatgcagCAAAGTGGTTCGGCTTTCGATAGCGCGGGTGCTGACAGTGATTTCCCAGAAGCAAAAGGCAGCGTTGAGGGAAGCTTACAAGAAGAAGAAATACCTTCCT

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv06s0004g04020.t01 (Vitis vinifera), 3'ss of exon 3
gtgcgcctccttc----ctccttctctctcgctcg--tttgttggtgtggctgg---atctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
 || |  | |||     ||  |  |     | | |  | ||    |     |     ||  || | |  | || |   | || |   | | |    |||| ||||||||| |    ||||| ||||  ||| |||| ||||| || |||||||||||||| ||  ||||||| || |||||||||||||   | || || 
ttgggttttctttgaaactaatgatagagtgattgggtctgaaaatacaaatatgctattacggtgattgattttaatgctgttttctgtgtgggtgcagAAAGGTGGTGAGGCTGTCGATTGCGCAGGTGTTGACAGTGATTTCCCAGAAGCAGAAGGCTGCTTTGAGGGAAGCTTACAAGAAGAAGAAGTTCCTGCCT

upper sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
lower sequence: EFJ18648 (Selaginella moellendorffii), 3'ss of exon 2
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
                          |   | || || | |||  |   || || |   |  || |      ||||  || ||| || ||||||||| ||  |   ||||||||||||||| || || || ||||| ||||  ||||||||   |||||| |||||||||||||| ||||      | || 
--------------------------gtgagatt-ttcgagtg-ttccctcgcgattttga-ttttcacttcggtgttttgtttctc-cagCAAGGTCGTCAGGCTCTCGATCGCGCGCGTTCTCACAGTAATCTCCCAGACCCAGAAGGCCAAGCTGAGAGAGGCGTACAAGAACAAGAAGTACATGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88444567|gb|CI557868.1|CI557868
EST:     CGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86511524|gb|CI154157.1|CI154157
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|10930722|gb|AU160996.1|AU160996
EST:     TCCGCGTCGCCAAGGTCACCGGCGGCGGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: TCCGCGTCGCCAAGGTCACCGGCGGC-GCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88555139|gb|CI485376.1|CI485376
EST:     GGTCACCGGCGGCGCCCCCGACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88490265|gb|CI427537.1|CI427537
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88980687|gb|CI022399.1|CI022399
EST:     TCACCGGCGGCGCCCCCGACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: TCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88513969|gb|CI441475.1|CI441475
EST:     GCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88237157|gb|CI237006.1|CI237006
EST:     CTCCGCGTCGCCAAGGTCACCGTCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCGCCTCGATCGCGCGCGTGCTGACGGTGATCTCGTAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88537507|gb|CI464458.1|CI464458
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88382232|gb|CI533436.1|CI533436
EST:     CAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88455265|gb|CI519286.1|CI519286
EST:     GTCGCNCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAANGTGGTGCTCACCTCGATCGCGGGCGTGCTGACGGTGATCTCGCAGAA
genomic: GTCGC-CAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88282353|gb|CI403749.1|CI403749
EST:     AACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: AACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88537441|gb|CI464389.1|CI464389
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86534034|gb|CI174240.1|CI174240
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88382032|gb|CI530838.1|CI530838
EST:     TCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: TCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88531061|gb|CI459500.1|CI459500
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATTTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88388835|gb|CI592723.1|CI592723
EST:     GTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88555153|gb|CI485392.1|CI485392
EST:     GCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88523190|gb|CI450994.1|CI450994
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88544378|gb|CI473078.1|CI473078
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88512689|gb|CI440195.1|CI440195
EST:     ACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: ACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|163925689|gb|EG714525.1|EG714525
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86822865|gb|CI251899.1|CI251899
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88478050|gb|CI415321.1|CI415321
EST:     AGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: AGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88502217|gb|CI429723.1|CI429723
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATTTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|55409034|gb|CV721410.1|CV721410
EST:     GGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88213872|gb|CI213721.1|CI213721
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88534858|gb|CI463617.1|CI463617
EST:     GGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|5455571|gb|AU075819.1|AU075819
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88474479|gb|CI411750.1|CI411750
EST:     ACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: ACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88543432|gb|CI473439.1|CI473439
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88533406|gb|CI460960.1|CI460960
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88514851|gb|CI442357.1|CI442357
EST:     CTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88517197|gb|CI444766.1|CI444766
EST:     GCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: GCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88366622|gb|CI556406.1|CI556406
EST:     CGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86532142|gb|CI172348.1|CI172348
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86423894|gb|CI062655.1|CI062655
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88539782|gb|CI469769.1|CI469769
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88277058|gb|CI397860.1|CI397860
EST:     CGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88238895|gb|CI236746.1|CI236746
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCGCCTCGATCGCGCGCGTGCTGACGGTGATCTCGTAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88481196|gb|CI418467.1|CI418467
EST:     CCCCCAACAAGCTTTCCCAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88278210|gb|CI399210.1|CI399210
EST:     CGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|8527842|gb|AU092657.1|AU092657
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|87033199|gb|CI187823.1|CI187823
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCTACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88485704|gb|CI422975.1|CI422975
EST:     CAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86532257|gb|CI172463.1|CI172463
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88490993|gb|CI428265.1|CI428265
EST:     TCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: TCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|88554088|gb|CI484247.1|CI484247
EST:     CGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
EST: gi|86254374|gb|CI059101.1|CI059101
EST:     CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGAT                         CAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA
genomic: CTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 85

AGGCGGAGCTGCAGGCCCAGCTCAAGGACCTCAAGGCGGAGCTCTCCCTCCTCCGCGTCGCCAAGGTCACCGGCGGCGCCCCCAACAAGCTCTCCAAGATgtgcgcctcc ... tttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG
                cgctcac  putative branch site (score: 85)
                                          ttttttttcgc  putative PPT
                                      tgaatttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcctccttcctccttctctctcgctcgtttgttggtgtggctggatctcgctcacgggttcttggggtggtgaattttttttcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG