1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgttataatttgttctagataaagcatgaaccaaaacacattccattgtcattagatccagatattttcttaaattgtcagtgctccgttagtcaactaatttcttcggcttccatgctaatttgattgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAAT
species | Oryza sativa |
transcript | LOC_Os04g27850.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATG GGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTEST: gi|38480271|gb|CF964360.1|CF964360
genomic: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGgtgtgttata ... attgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTT
EST: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATG GGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTEST: gi|29659193|gb|CB655468.1|CB655468
genomic: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGgtgtgttata ... attgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTT
EST: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATG GGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTT
genomic: GATTATGTGTCAAGCCAAACAAAGGAGATGCTGTGCTATTTTGGAGCATGgtgtgttata ... attgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTT
gtgctccgttagtcaactaatttcttcggcttccatgctaatttgattgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAAT
ttgtttc CT-rich tract
taatttgattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgttataatttgttctagataaagcatgaaccaaaacacattccattgtcattagatccagatattttcttaaattgtcagtgctccgttagtcaactaatttcttcggcttccatgctaatttgattgtttcagGGACTCGATGGTGAAACAGACTCAAACAGCATTCATGGTGGGTGCCCTGTTCTGGAAGGGGAGAAATGGTCAGCTACGAAATGGATGAGGCAAAAAGAAT
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