Sequence
atgc intronic sequence ATGC exonic sequence...gcttccttacttgggtcgattcaagcaaagcactcaaaaaagcaccatgttttaaaaaagttaacaagtttacacgtttttattaatatacgatttttagGGTGTTACAGTTTCCCTCTCCGACTCGGATCCGAACTTGCTGGGGAGGCCCAAGATAAGGACTACACGCCGATCCAAGAAATTTTTATGGCCTCAAGAGC
Basic information
species | Oryza sativa |
transcript | LOC_Os04g20410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgttttaaaaaagttaacaagtttacacgtttttattaatatacgatttttagGGTGTTACAGTTTCCCTCTCCGACTCGGATCCGAACTTGCTGGGGAGGCCCAAGATAAGGACTACACGCCGATCCAAGAAATTTTTATGGCCTCAAGAGC
tattaat putative branch site (score: 2)
ttttt putative PPT
tttttattaatatacg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcttccttacttgggtcgattcaagcaaagcactcaaaaaagcaccatgttttaaaaaagttaacaagtttacacgtttttattaatatacgatttttagGGTGTTACAGTTTCCCTCTCCGACTCGGATCCGAACTTGCTGGGGAGGCCCAAGATAAGGACTACACGCCGATCCAAGAAATTTTTATGGCCTCAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - -caagcaa
- - - - - - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - - - - -catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa