1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgcttcacctgggtggcccagacaacaccacagattattcctaggaggacaataggctctggttgtgccacctgctaactttcattatgcaagttcagGGTGCTGCTTGTGTTCTCTACCTTGGTCGAGGCCATCGTCCTCATGTTTGAGCGCTCAAGTGCTCGCCATCGTTATCTTGAGCAGGACAGAAAAGAGAAG
species | Oryza sativa |
transcript | LOC_Os04g05450.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
ggaggacaataggctctggttgtgccacctgctaactttcattatgcaagttcagGGTGCTGCTTGTGTTCTCTACCTTGGTCGAGGCCATCGTCCTCATGTTTGAGCGCTCAAGTGCTCGCCATCGTTATCTTGAGCAGGACAGAAAAGAGAAG
tgctaac putative branch site (score: 1)
tttcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcttcacctgggtggcccagacaacaccacagattattcctaggaggacaataggctctggttgtgccacctgctaactttcattatgcaagttcagGGTGCTGCTTGTGTTCTCTACCTTGGTCGAGGCCATCGTCCTCATGTTTGAGCGCTCAAGTGCTCGCCATCGTTATCTTGAGCAGGACAGAAAAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
-ttgcttc
- - - - - ctgggtg
- - - - - - - - - - - - -aacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcta