1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGTTCGATACAAAACACAATGGTATTTTAGGATTCGAAGAATTTGCCCGTGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaaatgcatctgggtgggtagcttaactacaaaatatagcgccttactgatagggaagtctataacctaaaaatagaaaaggacacatctatg...
species | Oryza sativa |
transcript | LOC_Os03g42840.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|58589859|gb|CF988167.1|CF988167
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: GCGCTCTCAGTATTTCATCCGAAGTGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|88577319|gb|CI673890.1|CI673890
genomic: GCGCTCTCAGTATTTCATCC-AAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|218489708|gb|FG943932.1|FG943932
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|38475615|gb|CF959748.1|CF959748
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|163926837|gb|EG710181.1|EG710181
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAGEST: gi|163920409|gb|EG709563.1|EG709563
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
EST: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACT TTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
genomic: TGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaa ... atccttgcagTTTCTTTCCAGCTATATGACCTCAAGCAACAAGGGTTCATTGAAAGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTCGATACAAAACACAATGGTATTTTAGGATTCGAAGAATTTGCCCGTGCGCTCTCAGTATTTCATCCAAATGCACCTCTCGACGAGAAAATTGACTgtaagtgtaaatgcatctgggtgggtagcttaactacaaaatatagcgccttactgatagggaagtctataacctaaaaatagaaaaggacacatctatg
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