1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctaaagatgcatcatatggtagttcgttcgcactgtaatgttgcttcgcctgcttgtttgattgagtggctcttcctgtatgcatgtcctaaacaaacagGCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCGACCAAGAGCGCAATTTACTTATGGGGGTATAACCACAGTGGGCAGACGG
species | Oryza sativa |
transcript | LOC_Os03g40260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTAGCTCCGGCCTCCGGGGGCAACGCCGCCGAGCCACGTCGCCGGTCAG GCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCGEST: gi|117232685|gb|CT842282.1|CT842282
genomic: GCTAGCTCCGGCCTCCGGGGGCAACGCCGCCGAGCCACGTCGCCGGTCAGgtatatttcg ... aaacaaacagGCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCG
EST: GCTAGCTCCGGCCTCCGGGGGCAACGCCGCCGAGCCACGTCGCCGGTCAG GCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGCGTGCCG
genomic: GCTAGCTCCGGCCTCCGGGGGCAACGCCGCCGAGCCACGTCGCCGGTCAGgtatatttcg ... aaacaaacagGCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCG
tcgcctgcttgtttgattgagtggctcttcctgtatgcatgtcctaaacaaacagGCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCGACCAAGAGCGCAATTTACTTATGGGGGTATAACCACAGTGGGCAGACGG
tcctaaa putative branch site (score: 2)
taaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaagatgcatcatatggtagttcgttcgcactgtaatgttgcttcgcctgcttgtttgattgagtggctcttcctgtatgcatgtcctaaacaaacagGCAATGGATATGGATGATATGCTCGGTGGCCTGCGTGTTGCCGGAGTGCCGACCAAGAGCGCAATTTACTTATGGGGGTATAACCACAGTGGGCAGACGG
- - - atgcatc
- - - - - - - - - - - - - - -gcactgt
- - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt