1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAGGCTGATGTGTTTCATATACTTTCAGGCATGTGGAAAACACCTGCTGAAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagccgtgtgctgcatataagaaaattataaaagcacacctcagggatactttagtcctaaagaaaaaagtcatctaatatcttgttttaatgggtattgcatcgtaacactaatttcaatctcctgtaaaatttcag
species | Oryza sativa |
transcript | LOC_Os03g20310.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGCTTCTTGTGGCTTGGGGG-TTTCGTTTCCTCTGAGCTTCTAAAG CTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTAEST: gi|29671390|gb|CB667665.1|CB667665
genomic: AAGGTGCTTCTTGTGGCTTGGGGGTTTTCG-TTCCTCTGAGCTTCTAAAGgtgcataagc ... aaaatttcagCTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAG CTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTAEST: gi|29687728|gb|CB684003.1|CB684003
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagc ... aaaatttcagCTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAG CTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTAEST: gi|66923418|gb|CX110266.1|CX110266
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagc ... aaaatttcagCTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAG CTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTAEST: gi|29671391|gb|CB667666.1|CB667666
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagc ... aaaatttcagCTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
EST: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAG CTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
genomic: AAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagc ... aaaatttcagCTTCTTGTGAATCAGCTCGAGCCATTAACTGAGCAGCAGTTGTTGGGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCTGATGTGTTTCATATACTTTCAGGCATGTGGAAAACACCTGCTGAAAGGTGCTTCTTGTGGCTTGGGGGTTTTCGTTCCTCTGAGCTTCTAAAGgtgcataagccgtgtgctgcatataagaaaattataaaagcacacctcagggatactttagtcctaaagaaaaaagtcatctaatatcttgttttaatgggtattgcatcgtaacactaatttcaatctcctgtaaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT