1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGAATGAATCCCGGTTATCTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAgtaagaccattctttttgtcctctatatggtttctggttgttttcacaatggtatgcttccatggaggagttgtattggtttgtcctagaaatttgtgcg...
species | Oryza sativa |
transcript | LOC_Os03g19930.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGACTTGGATCAAACCTGGGAGGTCCTTGCAGAGCCAATACAGACA GTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATGEST: gi|86250841|gb|CI007704.1|CI007704
genomic: CTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAgtaagaccat ... atctttgtagGTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATG
EST: CTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACA GTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATGEST: gi|33808748|gb|CF330259.1|CF330259
genomic: CTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAgtaagaccat ... atctttgtagGTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATG
EST: CTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACA GTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATG
genomic: CTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAgtaagaccat ... atctttgtagGTGATGCGAAGGTATGGAATCCCTGAACCTTATGAGAAGCTGAAGGAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATGAATCCCGGTTATCTGAAGACTTGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAgtaagaccattctttttgtcctctatatggtttctggttgttttcacaatggtatgcttccatggaggagttgtattggtttgtcctagaaatttgtgcg
- - - - - - - - - CTGAAG
- - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaggag