1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...acttgttcgctgcaccatctactctagcattatataactgttgccaacactcttgctgtcttgcgagcattatattgatgttccaaacataattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAAAAGTTGCTGGAGGAAATGGTGAGCAAGTGCTCAGCCGGGATATATACA
species | Oryza sativa |
transcript | LOC_Os03g02756.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCAG GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAEST: gi|300216075|gb|HO088701.1|HO088701
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATGTTCAG GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAEST: gi|88399969|gb|CI588273.1|CI588273
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG GTTGGAAAGGGAAGAGACGTTGGEST: gi|29613902|gb|CB618915.1|CB618915
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGG
EST: CATAACTCATCATGAATATGTTCAG GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAEST: gi|29675246|gb|CB671521.1|CB671521
genomic: CATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
EST: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAG GTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
genomic: TCAACTCAACTCTGCGCTTAGGGAACATAACTCATCATGAATATATTCAGgtctgaattt ... aattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGA
aacactcttgctgtcttgcgagcattatattgatgttccaaacataattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAAAAGTTGCTGGAGGAAATGGTGAGCAAGTGCTCAGCCGGGATATATACA
tattgat putative branch site (score: 62)
attatattgatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttgttcgctgcaccatctactctagcattatataactgttgccaacactcttgctgtcttgcgagcattatattgatgttccaaacataattctgtagGTTGGAAAGGGAAGAGACGTTGGTCTTAATCAGATTGCACTGTTCGAAGGAAAAGTTGCTGGAGGAAATGGTGAGCAAGTGCTCAGCCGGGATATATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -cgctgca
- - - - - - - -catctac
- - - - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaca