1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaagttaaaatgagagttttcctagttagtaggacaatatgatggtgatacatcagtaataattatatcctataatgatcaatgcattattgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCAGATTTTGGTCCACGAGCAAGTTTCTGGATGACCTTCCCCAAAGAAGGA
species | Oryza sativa |
transcript | LOC_Os02g57660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCEST: gi|58605614|gb|CK033647.1|CK033647
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTEST: gi|58605144|gb|CK033177.1|CK033177
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGT
EST: AAGGGTCACAGAAGCTATGATGTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCEST: gi|58666178|gb|CK054864.1|CK054864
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCEST: gi|58606811|gb|CK034844.1|CK034844
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAGTCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCEST: gi|88307423|gb|CI642071.1|CI642071
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCEST: gi|58612782|gb|CK040494.1|CK040494
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
EST: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAG GTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
genomic: AAGGGTCACAGAAGCTATGATCTTATGCTCAGTCTACAGCTTGGAATCAGgtaatccctc ... ttgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTC
gtgatacatcagtaataattatatcctataatgatcaatgcattattgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCAGATTTTGGTCCACGAGCAAGTTTCTGGATGACCTTCCCCAAAGAAGGA
taataattatatccta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagttaaaatgagagttttcctagttagtaggacaatatgatggtgatacatcagtaataattatatcctataatgatcaatgcattattgtgtttagGTACACGGTAGGAAAGATTACGCCCATTCAGAAACGTGAAGTCCGTGCTTCAGATTTTGGTCCACGAGCAAGTTTCTGGATGACCTTCCCCAAAGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - - - - - - - - tgataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgca