1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCAATGATATGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactcacacagtacaatcttccttccatcataccatccgtatattctgctgagaccgcaattgatgtctacgatatag
species | Oryza sativa |
transcript | LOC_Os02g57510.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|87033084|gb|CI187708.1|CI187708
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88225322|gb|CI225238.1|CI225238
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86889782|gb|CI333433.1|CI333433
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86252809|gb|CI010291.1|CI010291
genomic: TCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88240546|gb|CI239708.1|CI239708
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86259248|gb|CI010549.1|CI010549
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|29677589|gb|CB673864.1|CB673864
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88266777|gb|CI377679.1|CI377679
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86594404|gb|CI251276.1|CI251276
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|89189000|gb|CI012150.1|CI012150
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: AGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88206344|gb|CI206193.1|CI206193
genomic: AGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88847279|gb|CI011222.1|CI011222
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88829868|gb|CI004906.1|CI004906
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|89163094|gb|CI099984.1|CI099984
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86501990|gb|CI144623.1|CI144623
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86870285|gb|CI319391.1|CI319391
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86252311|gb|CI056048.1|CI056048
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88844063|gb|CI001120.1|CI001120
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88970621|gb|CI385311.1|CI385311
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: ATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGAC-AGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|218494842|gb|FG955901.1|FG955901
genomic: ATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|58690451|gb|CK079138.1|CK079138
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88835244|gb|CI370547.1|CI370547
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: GTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG NTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86853121|gb|CI324823.1|CI324823
genomic: GTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: CTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGAT-GGAACCCTCGTAGCATCATTCEST: gi|88980662|gb|CI022375.1|CI022375
genomic: CTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|58672890|gb|CK061576.1|CK061576
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88966184|gb|CI013060.1|CI013060
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|163918361|gb|EG714041.1|EG714041
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: GTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88202410|gb|CI201272.1|CI201272
genomic: GTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88832609|gb|CI008205.1|CI008205
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|88902951|gb|CI088489.1|CI088489
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|89197729|gb|CI013719.1|CI013719
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|86416944|gb|CI030955.1|CI030955
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: GGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCEST: gi|89180748|gb|CI009656.1|CI009656
genomic: GGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
EST: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATG GTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
genomic: TGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactc ... tacgatatagGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAATGATATGGATTCGTCAAGGGGTTTTCTGTCTGGAACAGTGGACAAGTTCAAGATGgtaaacactcacacagtacaatcttccttccatcataccatccgtatattctgctgagaccgcaattgatgtctacgatatag
- - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG