Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagcctgaccttataaatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA

Basic information

species Oryza sativa
transcript LOC_Os02g56960.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G102230_T03 (Zea mays), 3'ss of exon 5
tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagcctgaccttataaatatgcacttccatga------tgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
     |  | | |  | ||||| |   |       |     | |||||  |   || ||     |   |||  | ||  ||| ||| ||||||||      |||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || || ||||||||||| |||||                  
-----atttctctaatctcttggagattctcttagcttttattataatctaacactacagttggaaaatgatgt-attgatacgcatttccatgaccatgatgcagGCTCTGCCATCACTGGACCCATCGGAAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCCAGCGCGGCAAATGCGATTGTCTAG-----------------

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G078396_T03 (Zea mays), 3'ss of exon 4
------------------------------------------------tgacca-gctatttcctttcttgaaatcttgtactacaaaactaataa-tgcatagcttcacgattagcctg--accttata----------------aatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
                                                |      ||| |   | |  ||||||| |  | | | || ||    |  ||  |||||| |  || |||  |   |||   |                |||||| ||| |  || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||                 
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaat-tcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAA-----------------

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G078396_T02 (Zea mays), 3'ss of exon 3
------------------------------------------------tgacca-gctatttcctttcttgaaatcttgtactacaaaactaataa-tgcatagcttcacgattagcctg--accttata----------------aatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
                                                |      ||| |   | |  ||||||| |  | | | || ||    |  ||  |||||| |  || |||  |   |||   |                |||||| ||| |  || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||  |||||||    |  |
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaat-tcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G102230_T01 (Zea mays), 3'ss of exon 4
tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagcctgaccttataaatatgcacttccatga------tgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
     |  | | |  | ||||| |   |       |     | |||||  |   || ||     |   |||  | ||  ||| ||| ||||||||      |||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || || ||||||||||| ||||| | ||| |||    |  |
-----atttctctaatctcttggagattctcttagcttttattataatctaacactacagttggaaaatgatgt-attgatacgcatttccatgaccatgatgcagGCTCTGCCATCACTGGACCCATCGGAAAGGAGTGTGCTGATCTGTGGCCTAGGATTGCCAGCGCGGCAAATGCGATTGTCTAGTGGAATCAGTTGATCGA

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT3G04400.1 (Arabidopsis thaliana), 3'ss of exon 3
--tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagcctgaccttataaatatgcacttccatg-atgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
        | |||       ||  ||  |    |   |  |   |  |||   |||  |||   |||     | || || | | ||   |   ||| |   ||| ||||| ||||||||||| |||||||||||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | |    |  ||    
agaagtttgatatggggcaactcaaagcca---atctcgtagtgataaatcagtagtatcatatttacttgtagctgatgagtctgttgtgtgatgtaattagGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAAGCAAGCTTGAGATCTCT

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv05s0049g01790.t01 (Vitis vinifera), 3'ss of exon 3
tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagc--ctgaccttataaatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
   ||  |  ||    |     |||| ||| | |||| || ||  |      |  |  | | |||     |  | || |   | |  | |       |  |||||| || || ||||| || || || |||||||| |||||||| |||||||||||||| || ||||||||||| || || |||       |   |  | |
-atcctacctttgtggtaaagaaaattttgca-tacataattatgatattggaaatggatggttaatatttttctttctggttgttgattggtgatttttagGTTCGGCTATTACTGGTCCAATTGGTAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCCAGCGCAGCAAATGCCATTGTTTAAGAACTTTAATTACCGTA

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S280_69V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------------------------------------------tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcat------agcttcacgattagcctgac--cttataaatatgcacttccatga----tgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
                                                                          |||   ||   |   | || |   || |||| ||          |  ||||       |  ||   ||| |||||      |||   ||| |   ||     |    |||||||||||| |||||||| ||||| || ||||||||||| ||| | ||||| |||||||| ||||| || ||||| || |||| |  | |  ||   |   |
gtacgcagatatttccctcaaatatctttgacgtcagattcgttttagcaaaagatccagttagcgaatgagaatgattggcagatatatgtcatcgtatgttgttcttatcggaatgttgtgcacgttatgacttttgggatgagcctactgatttactgataggttttttggcaacttttgcagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGCGCCGATTTGTGGCCTAGGATTGCTAGTGCTGCCAATGCCATTGTCTGAGGGCAATAGTTGTAATA

upper sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S62_136V6.1 (Physcomitrella patens), 3'ss of exon 3
------------------tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgat----------tagcctgaccttataaa-----tatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA-
                  ||    | |  | |  |      | |    |    | |          | ||||||  | | |          | | | || || || |      |  |   ||  |   |||||||||||||||||||||||| ||||| ||||||||||| ||  | ||||| |||||||| || || || || ||||| || | |  |  | ||     ||  
gtgagtgtatgcagccggtgcattgatggtgcagtctgcagattgggatgggcctagggggggggggtatagctgtaaggtggagggtggattggcagagctgatgagggttgtgcgtggttgtaatgtgcagGTTCTGCCATCACTGGACCGATCGGGAAGGAGTGCGCAGACTTGTGGCCGAGGATTGCGAGCGCTGCCAACGCGATTGTTTGAGAGG-GTAGTTTGGGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4716741|gb|AU057857.1|AU057857
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88399150|gb|CI603817.1|CI603817
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|163929187|gb|EG710996.1|EG710996
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCC
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCC
EST: gi|88267240|gb|CI379175.1|CI379175
EST:     ACAATGCTTGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAATGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88535858|gb|CI465571.1|CI465571
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88408315|gb|CI551444.1|CI551444
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88413117|gb|CI523678.1|CI523678
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|86420652|gb|CI056641.1|CI056641
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|75980861|gb|AJ853663.1|AJ853663
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88304528|gb|CI518184.1|CI518184
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|5803575|gb|AI978545.1|AI978545
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|4714284|gb|AU058251.1|AU058251
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88306825|gb|CI671989.1|CI671989
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGAT
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGAT
EST: gi|88727320|gb|CI750975.1|CI750975
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGA
EST: gi|88974527|gb|CI022068.1|CI022068
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|38480740|gb|CF964829.1|CF964829
EST:     ACCATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCC
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCC-
EST: gi|88366779|gb|CI558953.1|CI558953
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88428154|gb|CI557048.1|CI557048
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|66913963|gb|CX100811.1|CX100811
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33826018|gb|CF338815.1|CF338815
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88971954|gb|CI390537.1|CI390537
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|163926773|gb|EG715061.1|EG715061
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88513937|gb|CI441443.1|CI441443
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88375977|gb|CI530481.1|CI530481
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88570501|gb|CI661874.1|CI661874
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAG
EST: gi|88275413|gb|CI395264.1|CI395264
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|58603143|gb|CK013671.1|CK013671
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|163925747|gb|EG714583.1|EG714583
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88357193|gb|CI616080.1|CI616080
EST:     ACAATGCTGGAGTCATTGTGAACCC-AAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGA
EST: gi|88389881|gb|CI626650.1|CI626650
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGACAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88393304|gb|CI618192.1|CI618192
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGGGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88275336|gb|CI395940.1|CI395940
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88456689|gb|CI544626.1|CI544626
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88327419|gb|CI645206.1|CI645206
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAG
EST: gi|88555813|gb|CI486095.1|CI486095
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|163920874|gb|EG710085.1|EG710085
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88381994|gb|CI530800.1|CI530800
EST:     ATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88491205|gb|CI428477.1|CI428477
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88250581|gb|CI348811.1|CI348811
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|58683542|gb|CK072229.1|CK072229
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88474729|gb|CI412000.1|CI412000
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88456894|gb|CI529095.1|CI529095
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|163918643|gb|EG711453.1|EG711453
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88288496|gb|CI661701.1|CI661701
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGA
EST: gi|88399288|gb|CI618478.1|CI618478
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGG
EST: gi|88395042|gb|CI609358.1|CI609358
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88452562|gb|CI558223.1|CI558223
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88281687|gb|CI403083.1|CI403083
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88304497|gb|CI518153.1|CI518153
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGGCCC
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCT-GGCCC
EST: gi|88480454|gb|CI417725.1|CI417725
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88382183|gb|CI533387.1|CI533387
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88439347|gb|CI536319.1|CI536319
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88471737|gb|CI409008.1|CI409008
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88349008|gb|CI654052.1|CI654052
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGG
EST: gi|88259947|gb|CI363157.1|CI363157
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88377917|gb|CI638051.1|CI638051
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGG
EST: gi|88520973|gb|CI448627.1|CI448627
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88348155|gb|CI637616.1|CI637616
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGG
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGG
EST: gi|88970209|gb|CI383711.1|CI383711
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|5803577|gb|AI978547.1|AI978547
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88269497|gb|CI380795.1|CI380795
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88509992|gb|CI437498.1|CI437498
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88471241|gb|CI408512.1|CI408512
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88508066|gb|CI435572.1|CI435572
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88451567|gb|CI539358.1|CI539358
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88292215|gb|CI535009.1|CI535009
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88414106|gb|CI533476.1|CI533476
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88970539|gb|CI384041.1|CI384041
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCCCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|25044735|gb|AJ420718.1|AJ420718
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88459408|gb|CI519469.1|CI519469
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|44669513|gb|CR282947.1|CR282947
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|88510243|gb|CI437749.1|CI437749
EST:     ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 42 (upstream exon), 75 (downstream exon)
Score: 203

ACAATGCTGGAGTCATTGTGAACCCCAAGGGAGAGATGAAAGgtattatcct ... catgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcatagcttcacgattagcctgaccttataaatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA
                    gcctgac  putative branch site (score: 203)
                                       cacttcc  putative PPT
                            ttataaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgaccagctatttcctttcttgaaatcttgtactacaaaactaataatgcatagcttcacgattagcctgaccttataaatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA

-gaccagc
- - - - - - - -tttcttg
- - - - - - - - - - - - - - - - ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - cttcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcac