1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctcttctcctgaggaacagatatttttgcttcgaatgcgatgataccttttgtgattaatcgtccatggcttgatttactacttggtgtattttgttagGTTGCTTAGGTATTGTTGATGGCGATCGAGTTGAACTTGACAACCTGCATCGTCAG
species | Oryza sativa |
transcript | LOC_Os02g56080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
accttttgtgattaatcgtccatggcttgatttactacttggtgtattttgttagGTTGCTTAGGTATTGTTGATGGCGATCGAGTTGAACTTGACAACCTGCATCGTCAG
ttttgtt CT-rich tract
tattttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttctcctgaggaacagatatttttgcttcgaatgcgatgataccttttgtgattaatcgtccatggcttgatttactacttggtgtattttgttagGTTGCTTAGGTATTGTTGATGGCGATCGAGTTGAACTTGACAACCTGCATCGTCAG
- - - ctcctga
- - - - - - - gaacaga
- - - - - - - - - - - - - ttgcttc
- - - - - - - - - - - - - - - - - - tgcgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggtg