1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGGGTACCCTCCCATCCGGCGGAGTTGGGAGTCGTGCCTAGGGGGAATCTCAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTGgtaaatatctgcgccccaaatcctttcgactgtgatatttgcttacgcggatcggctgacctgagtgggttcgtgtgtttatatatggtttggattcgcc...
species | Oryza sativa |
transcript | LOC_Os02g54624.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTG AATAGCTCTCTTTGTGATATAAATCTAAGTGTTCACTTGAAGCTGGAAGTCEST: gi|58666982|gb|CK055668.1|CK055668
genomic: CAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTGgtaaatatct ... tctcttgcagAATAGCTCTCTTTGTGATATAAATCTAAATGTTCACTTGAAGCTGGAAGTC
EST: CAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTG AATAGCTCTCTTTGTGATATAAATCTAAGTGTTCACTTGAAGCTGGAAGTC
genomic: CAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTGgtaaatatct ... tctcttgcagAATAGCTCTCTTTGTGATATAAATCTAAATGTTCACTTGAAGCTGGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGGTACCCTCCCATCCGGCGGAGTTGGGAGTCGTGCCTAGGGGGAATCTCAGCTGTCGGGCCACCGATCTACCCTCCACGGTGTTGCTCTAAGTCCGTGgtaaatatctgcgccccaaatcctttcgactgtgatatttgcttacgcggatcggctgacctgagtgggttcgtgtgtttatatatggtttggattcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtggg