1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtcgagtggttcaaaataaataacaggattatatagtgtttcaaagtttacattatcacttcatgtgtgctgtgtgttaactactacttcatgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACTGGTGCACAGCATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGT
species | Oryza sativa |
transcript | LOC_Os02g53210.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|87031749|gb|CI272450.1|CI272450
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|38482043|gb|CF966104.1|CF966104
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|33692950|gb|CF321189.1|CF321189
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|58693404|gb|CK082091.1|CK082091
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|86827594|gb|CI272900.1|CI272900
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGTTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACEST: gi|58600474|gb|CK011002.1|CK011002
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
EST: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAG CATTTACAAGCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
genomic: CTGTATGGTTTTGTTGCCTTCTTTTCAACATGCAACAGGCATCGGCTTAGgtaaccttcc ... catgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAAC
agtttacattatcacttcatgtgtgctgtgtgttaactactacttcatgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACTGGTGCACAGCATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGT
tgttaac putative branch site (score: 2)
ctacttc putative PPT
acattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcgagtggttcaaaataaataacaggattatatagtgtttcaaagtttacattatcacttcatgtgtgctgtgtgttaactactacttcatgctgcagCATTTACAACCACATTCAAGTATTTCTCCGACGCCTATCTCGTGTTTTAACTGGTGCACAGCATACCACCTCTTGTGAAGGCACACGGAGGTATTCTAGT
- - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgt