1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttttctgcaacctctgagacgatatgtctgctactctgctcttcaatttgtattgacctcactatgataaactttttgtgttgattctgatatctttctcttttgtattaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTGCACCTTTCCGGCTTGTTGTTGCGATAGCAAGTTTTGTGGCAGACTCTTT
species | Oryza sativa |
transcript | LOC_Os02g53210.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATGATTATATGGCCTTTTTGGCTGGTCTTCAGTGTTGTGCTTAATGTTG CAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTGEST: gi|58600474|gb|CK011002.1|CK011002
genomic: GATGATTATATGGCCTTTTTGGCTGGTCTTCAGTGTTGTGCTTAATGTTGgtatgttttc ... ttaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTG
EST: GATGATTATATGGCCTTTTTGGCTGGTCTTCAGTGTTGTGCTTAATGTTG CAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTGEST: gi|33683910|gb|CF312149.1|CF312149
genomic: GATGATTATATGGCCTTTTTGGCTGGTCTTCAGTGTTGTGCTTAATGTTGgtatgttttc ... ttaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTG
EST: ATGATTATATGGCCTTTTTGGCTGGTCTTCNAGTGTTGTGCTTAATGTTG CAAATTCAGTCCTGTACCCTNTCGTTTGGCTTCTTGGAGAAATTCTAGCTG
genomic: ATGATTATATGGCCTTTTTGGCTGGTCTTC-AGTGTTGTGCTTAATGTTGgtatgttttc ... ttaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTG
tatgataaactttttgtgttgattctgatatctttctcttttgtattaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTGCACCTTTCCGGCTTGTTGTTGCGATAGCAAGTTTTGTGGCAGACTCTTT
tattaac putative branch site (score: 25)
tctttctcttttgtat CT-rich tract
ttttgtattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttctgcaacctctgagacgatatgtctgctactctgctcttcaatttgtattgacctcactatgataaactttttgtgttgattctgatatctttctcttttgtattaacttcagCAAATTCAGTCCTGTACCCTTTCGTTTGGCTTCTTGGAGAAATTCTAGCTGCACCTTTCCGGCTTGTTGTTGCGATAGCAAGTTTTGTGGCAGACTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG