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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAACCACCACCCCCAATCGGATCCCTCACCCGATTGGCCCGGCCAGATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaatcgttcttgccgctcggtccgccctcttcctgttcctgctgtcctagccgtgcccgttcgcctaatcgttctgcgtgatcggtggaagttc...

Basic information

species Oryza sativa
transcript LOC_Os02g52430.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687484|gb|CF315723.1|CF315723
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88735143|gb|CI758651.1|CI758651
EST:     ATCGCCGNCGATCCGACCCCGCGCAACCCTCTCCCGNGGCCGCGAGCGAG                         CAGAANCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|55441666|gb|CV734158.1|CV734158
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88762863|gb|CI772419.1|CI772419
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88590627|gb|CI708407.1|CI708407
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88740499|gb|CI764007.1|CI764007
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88695927|gb|CI739502.1|CI739502
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|55413649|gb|CV726025.1|CV726025
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|58588337|gb|CF986645.1|CF986645
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAAGTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|55433648|gb|CV729935.1|CV729935
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88317816|gb|CI672411.1|CI672411
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGNCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|86902092|gb|CI300331.1|CI300331
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88325993|gb|CI651040.1|CI651040
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGNGAGC--G                         -AGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|33680671|gb|CF308910.1|CF308910
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88336451|gb|CI643264.1|CI643264
EST:     ATCGCCGCCGATCCGACCCCGNGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-AAC-GAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88759865|gb|CI769421.1|CI769421
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88309784|gb|CI656525.1|CI656525
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88577614|gb|CI674212.1|CI674212
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|117239805|gb|CT848232.1|CT848232
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAAGTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88328481|gb|CI676690.1|CI676690
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88744178|gb|CI767538.1|CI767538
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88734915|gb|CI758423.1|CI758423
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88324924|gb|CI644935.1|CI644935
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88826552|gb|CI777117.1|CI777117
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88730192|gb|CI753807.1|CI753807
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCANAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88347160|gb|CI631240.1|CI631240
EST:     TCNGCCGC-GATTCGACCCCGCGCAACCCTCTCC-GCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: TC-GCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88826281|gb|CI776846.1|CI776846
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88571530|gb|CI662903.1|CI662903
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAG                         -A-A-CCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88345479|gb|CI629740.1|CI629740
EST:     ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGNCGNGAGCGAG                         CAGAANCGAATTCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG
EST: gi|88348769|gb|CI631463.1|CI631463
EST:     ATCGCCGCCGATCCGACCCCGCGCCACCCTCTCCCGCGGCCGCGAGCGAG                         CAGAACCGAATCNAATATGGCTGGCTTGCCATTAGCCACAGCCGAATTATG
genomic: ATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaat ... ctaatgacagCAGAACCGAATCCAATATGGCTGCCTTGCCATTAGCCACAGCCGAATTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCCAACCACCACCCCCAATCGGATCCCTCACCCGATTGGCCCGGCCAGATCGCCGCCGATCCGACCCCGCGCAACCCTCTCCCGCGGCCGCGAGCGAGgtaaggaaatcgttcttgccgctcggtccgccctcttcctgttcctgctgtcctagccgtgcccgttcgcctaatcgttctgcgtgatcggtggaagttc

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