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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAAGGAGGAGGCCGCCGTGCACGCGCGGATGCGCCGCCGGACGCAGTTCTCCCGCACCGCCGTCCGCAACCTCATCGTCCTCTCCGTCCTCGCCGAGgtccgcatatcgaaatccccccctcttctatattactctattcgtttccctaacgaaaccttccgccgttagcatgattcggttcggatgattggtggtg...

Basic information

species Oryza sativa
transcript LOC_Os02g41990.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g41990.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G074436_T01 (Zea mays), 5'ss of exon 1
GTCCAAGGAGGAGGCCGCCGTGCACGCGCGGATGCGCCGCCGGACGCAGTTCTCCCGCACCGCCGTCCGCAACCTCATCGTCCTCTCCGTCCTCGCCGAGgtccgcatatcgaaatccccccctcttctatattactctattcgtttccctaacgaaaccttccgccgttagcatgattcggttcggatgattggtggtg----
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||  |||||| || ||||||||||| |||||||||||||||||||||  ||  |     |   ||    |||     |  | | |||  |||||   | |    |   |  | |    |||| ||| | |     ||| | ||     
GTCCAAGGAGGAGGCAGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCGCCGTGCGGAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctccacgt----gttttccttctttcgcccctcttgttttctgttcccacccaatgtttggagatgatttggtgatgcgggtagcggttttgctcgtctttg

upper sequence: LOC_Os02g41990.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G153332_T01 (Zea mays), 5'ss of exon 1
GTCCAAGGAGGAGGCCGCCGTGCACGCGCGGATGCGCCGCCGGACGCAGTTCTCCCGCACCGCCGTCCGCAACCTCATCGTCCTCTCCGTCCTCGCCGAGgtccgcatatcgaaatccccccctcttctatattactctattcgtttccctaacgaaaccttccgccgttagcatgattcggttcggatgattggtggtg------
 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  | |||| || ||||||||||| ||||||||||||||||||||| |||  |     |   ||  ||| |  |    ||||  |  ||| ||   |   |  |      ||  |  |||  ||| | |  |  ||  | ||       
ATCCAAGGAGGAGGCCGCCGTGCACGCGCGGATGCGCCGGCGGACGCAGTTCTCGCGCCGCACCGTGCGAAACCTCATCGTACTCTCCGTCCTCGCCGAGgtctgcacgt----gttttcctttctccc-tgcccctcttgttttttaccccccctgatttgagatggtctg-gtgacgcggctggcttttttactcgtctttggc