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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattatactagtactagctggtgtgata...

Basic information

species Oryza sativa
transcript LOC_Os02g40880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G140116_T01 (Zea mays), 5'ss of exon 2
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctct-cgtacgccttgaactgtttccatttgtacccgctttataatt-tggatctatagaaattatactagtactagctg-gtgtgata
||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||| ||||| |||||||| ||||| |||||||||||| ||||||| |  | | | |   |    || ||| |||    |   | |||   | ||| ||  |   |||||     |   ||   |  | | ||||  | || ||
GTTCAAGAGGTTCGTGGAGATCGGGCGCGTGGCCCTGGTGAACTACGGGGAGGACTATGGCCGTCTCGTTGTCATCGTCGATGTGGTCGACCAGAACAGGgtaaggactgacctttaggctcgtgctttgtacta---ctggtagtaatgggtttgtatctgctgatcttcgttagaaatgtgaacaatcgctgtatttggta

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 2
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattatactagtactagctggtgtgata--
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| ||||| | |  |   |||||| ||      |    |||    |   |       ||   || | || || ||||    || ||  |  ||    || || |   
GTTCAAGAGGTTCGTGGAGATCGGGCGCGTGGCCCTTGTGAACTACGGCAAAGACTACGGCCGCCTCGTCGTCATCGTCGATGTGGTCGACCAGAACAGGgtatgtactgagctctctcataaatgc-gtgtcgttctgttcgctgttgtgatttcgatctagagctttagagga-atgcttttgatatagtgtttggttcc

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA20G35000.1 (Glycine max), 5'ss of exon 2
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaag-catcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattatactag---tactagctggtgtgata-------
 |||||||||| ||| ||||||||| |||| ||||   | |||||||||||||| || ||| | ||||||||||| || || ||| | ||||||||| | ||||  |  |  |  | | |     | |     | ||  |||||   | | |    |    ||  |   ||||| |  | || |   |  |        | |||       
TTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGACGTCATTGACCAGAACAGAgtaactccccaccaccacccaagttcttacctttattcacatttacgcacacccatttgcatgttttcttagaattagttcttgctttgttgataatcctaataatattag

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA10G32580.1 (Glycine max), 5'ss of exon 2
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattat-actagtactagctggtg-tgata----
 |||||||||| ||| ||||||||| |||| || |   | |||||||||||||| || ||| | |||||||||||||| || ||| | ||||||||| | |||| |  |  |  | | |     | |     || |  |||||   |   |    |    ||  |   ||||| |  |   |  |  | | || || | |||    
TTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacc-cctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatag

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA03G06380.1 (Glycine max), 5'ss of exon 2
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaact--gtttccatttgtacccgctttataatttggatctatagaaattatactag---tactagctggtgtgata-------
 ||||||||||  || ||||| ||| ||||  |||   | |||||||||||||| || ||| | ||||||||||| || |||||| | ||||||||| | ||||   ||       | |  | |   | | ||   ||  |||||  || |      |    ||  |   ||||| |  | || |   |  |        | |||       
TTTCAAGAGGTATGTTGAGATTGGGAGGGTTTCCCAAATCAACTACGGCAAGGAATATGGCAGGCTCGTCGTCATTGTCGATGTCATTGACCAGAACAGAgtaactctcccaccaccacccaagttcttacctttattcacatttacacacaaccatttgcatgctttcttagaattagttcttgctttgttgataatcctaataatattag

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 3
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattata--ctagtactagctggtgtgata
 |||||| ||| ||||||| ||||||| || || || || |||||||| || ||||||||| | ||||||||||| || || ||| | || ||||| |||||| |  |  |  | | || |     |||  || | |    |||     |     |  |  | |||     ||  ||     |  |  |  ||| |||    
TTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGAAAAGACTACGGCAGGCTCGTCGTCATAGTCGACGTCATTGATCAGAATCGGgtatgtgtttttctttttcattttatttgctctttgtttggttgc-tgggaaagttggtgagtatcggagaaatctaagggtttatgttttctgttgtttc-

upper sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv11s0118g00670.t01 (Vitis vinifera), 5'ss of exon 3
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattatactagtactagctggtgtgata-
 |||||| ||| ||||||||||||||| || || || || ||||||||||| || |||||| | ||||||||||| || |||||| | || ||||| |||||| |  |     | | | || |    |    |  |  |  ||||   |      | || |        || | |  | || | ||         | ||  
TTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGCAAAGAATACGGCAGGCTCGTCGTCATAGTCGATGTCATTGATCAGAATCGGgtatgtgtgaatgtgtgt-gtgcttgatttcatcctctcggttgttttctaagagttatctcagcaacgagtagtggttctggaacggaaaaccttaattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88963692|gb|CI029468.1|CI029468
EST:     CCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: CCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|33686763|gb|CF315002.1|CF315002
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|84117072|gb|CD150839.1|CD150839
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGGCATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88907093|gb|CI089887.1|CI089887
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTNGANGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|38468828|gb|CF952959.1|CF952959
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|55440181|gb|CV733400.1|CV733400
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGTTGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86594583|gb|CI253482.1|CI253482
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|55437659|gb|CV732116.1|CV732116
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86508232|gb|CI150865.1|CI150865
EST:     ACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: ACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86421351|gb|CI057340.1|CI057340
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|163928521|gb|EG711406.1|EG711406
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86530662|gb|CI170868.1|CI170868
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88210164|gb|CI210013.1|CI210013
EST:     TGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: TGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|27576844|gb|CA999538.1|CA999538
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86855529|gb|CI267058.1|CI267058
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88210121|gb|CI209970.1|CI209970
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|27576065|gb|CA998759.1|CA998759
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTTGTCCACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|87025530|gb|CI267896.1|CI267896
EST:     GACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: GACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88361438|gb|CI605219.1|CI605219
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88573835|gb|CI665604.1|CI665604
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|163923123|gb|EG712809.1|EG712809
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|55412233|gb|CV724609.1|CV724609
EST:     ACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: ACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86846806|gb|CI283002.1|CI283002
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88981783|gb|CI027361.1|CI027361
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|8527595|gb|AU092410.1|AU092410
EST:     CGTCGTCATCGTTGATGTCGTCGCCCAGAACCGG                         GCACTTGTGGATGCTCCNGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: CGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|38477698|gb|CF961831.1|CF961831
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|218482405|gb|FG956210.1|FG956210
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88227603|gb|CI227083.1|CI227083
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86526197|gb|CI166403.1|CI166403
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|89168716|gb|CI038568.1|CI038568
EST:     TCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGTTCAGGTGCCAGATCAACTTCAAGAGG
genomic: TCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|5005067|gb|AU069684.1|AU069684
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88208635|gb|CI208484.1|CI208484
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|58689726|gb|CK078413.1|CK078413
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|87010314|gb|CI281204.1|CI281204
EST:     TCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: TCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86422170|gb|CI059743.1|CI059743
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|33690535|gb|CF318774.1|CF318774
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86847162|gb|CI285222.1|CI285222
EST:     CGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: CGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|218478587|gb|FG949089.1|FG949089
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|15847420|gb|BI795696.1|BI795696
EST:     GGATTACGGCCGCCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: GGACTACGGCCG-CCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|55411943|gb|CV724319.1|CV724319
EST:     TACGGCCGCCTCGTTGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: TACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88353547|gb|CI632938.1|CI632938
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|3761072|gb|C98326.1|C98326
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGNCCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|87009649|gb|CI310752.1|CI310752
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|58694553|gb|CK083240.1|CK083240
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|33690536|gb|CF318775.1|CF318775
EST:     CGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: CGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88210133|gb|CI209982.1|CI209982
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88262451|gb|CI366225.1|CI366225
EST:     ACCAGAACCGG                         GCAC-TGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: ACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|163920470|gb|EG709575.1|EG709575
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86530699|gb|CI170905.1|CI170905
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|89168525|gb|CI038879.1|CI038879
EST:     CGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: CGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|58595050|gb|CF993358.1|CF993358
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86534263|gb|CI174469.1|CI174469
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88829253|gb|CI074123.1|CI074123
EST:     ACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: ACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|87030517|gb|CI254946.1|CI254946
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCCAAGAG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTC-AAGAG
EST: gi|55408286|gb|CV720662.1|CV720662
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86254598|gb|CI059325.1|CI059325
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|25800631|gb|CA756592.1|CA756592
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86529009|gb|CI169215.1|CI169215
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|38474046|gb|CF958178.1|CF958178
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86854316|gb|CI254261.1|CI254261
EST:     AGGACAACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|8335133|gb|BE040117.1|BE040117
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTCGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|8527837|gb|AU092652.1|AU092652
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|568014|gb|D38849.1|D38849
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88212421|gb|CI212061.1|CI212061
EST:     GACTACGGCCGCCTGGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: GACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|88975611|gb|CI021693.1|CI021693
EST:     TCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: TCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|86417522|gb|CI031731.1|CI031731
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
EST: gi|55435598|gb|CV730929.1|CV730929
EST:     AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCCGAACCGG                         GCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG
genomic: AGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 235

GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcg ... gaatcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGGCTTTCCCTGACTGACATCAAGATTGACATCAAACGTGTCCCGAAGAAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCAAGAGGTTCGTGGAGATCGGGCGGGTGGCCCTGGTGAACTACGGCAAGGACTACGGCCGCCTCGTCGTCATCGTTGATGTCGTCGACCAGAACCGGgtaagcatcgtcttctctcgtacgccttgaactgtttccatttgtacccgctttataatttggatctatagaaattatactagtactagctggtgtgata

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