1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tactaactacaaaggagtaaattcttcataagtatgatttttgggcagcctggttaactctggttcagaacatgcctgactaactgtgctatacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAGAACATTGACGATCAAATTGATTGGAACGTCAATGG
species | Oryza sativa |
transcript | LOC_Os02g40680.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACCATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAEST: gi|88262730|gb|CI366504.1|CI366504
genomic: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
EST: GCAAGCCCTTTCAAGACAATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAEST: gi|38476753|gb|CF960886.1|CF960886
genomic: GCAAGGCCTTTCAAGACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
EST: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAEST: gi|218495835|gb|FG960251.1|FG960251
genomic: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
EST: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAEST: gi|58596171|gb|CK006699.1|CK006699
genomic: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
EST: GACAATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAEST: gi|88988639|gb|CI039058.1|CI039058
genomic: GACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
EST: TGAATTATTGAAGGTGTTTGAAAGCGAGGCCTTTCAAGACAATTTTCAAG ATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
genomic: TGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGgtatgacatt ... atacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAA
cagcctggttaactctggttcagaacatgcctgactaactgtgctatacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAGAACATTGACGATCAAATTGATTGGAACGTCAATGG
gactaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaactacaaaggagtaaattcttcataagtatgatttttgggcagcctggttaactctggttcagaacatgcctgactaactgtgctatacctgcagATCTTGTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAGAACATTGACGATCAAATTGATTGGAACGTCAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - ctacaaa
- - - - - - - - - - - - - - - - - - - - - - - agcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgct