1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctctcccctctcggttcgccagtttgccatatgtgcaaatacctagtggtatctgaatatctgcgcgcgcggcgtgcatgcag
species | Oryza sativa |
transcript | LOC_Os02g40010.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAG GCATCATGTTTAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAEST: gi|88828038|gb|CI778603.1|CI778603
genomic: ACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctct ... gtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCA
EST: TCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAG GCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCAEST: gi|88743547|gb|CI767055.1|CI767055
genomic: TCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctct ... gtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGCTGCGCCCGGGGGTGTTCA
EST: TCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAG GCATCATGTTCAACGACATCACGCCGCTGCTGC
genomic: TCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctct ... gtgcatgcagGCATCATGTTCAACGACATCACGCCGCTGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCAAAGCCGACGCCGCCGCCTGCGGCCGTGGCCGTCGACCCCCGGCTTCAGGGCATCTCCGACGCCATCCGCGTCGTCCCCCACTTCCCCAAGCAAGgtccgtctctcccctctcggttcgccagtttgccatatgtgcaaatacctagtggtatctgaatatctgcgcgcgcggcgtgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG