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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttgcttttatgcaatgttcttgctgccatatttttcgttttatccatcagggaaattcttgcagctcacatgttcacatgactctgtgcagGCATCAGGAACTATGGCTTTTCTTTTGGTTGCAACGACAACAATGTGCTGGCTGGCCACCAGGTTGTGTGAAAGCCGCGGTTCTAGGCGCCCTCCACTAC

Basic information

species Oryza sativa
transcript LOC_Os02g38470.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88835812|gb|CI370917.1|CI370917
EST:     ATCTTCATTAGAACATGGCTGCTCTGCTCCCTCTGTAAATATAATCTTAG                         GCATCAGGAACTATGGCTTTTCTTTTGTTTGCAACGACAACAATGTGCTGG
genomic: ATCTTCAGTAGAACATGGCTGCTCTGCTCCCTCTGTAAATATAATCTTAGgttggtttgc ... ctctgtgcagGCATCAGGAACTATGGCTTTTCTTTTGGTTGCAACGACAACAATGTGCTGG
EST: gi|88834467|gb|CI077750.1|CI077750
EST:     ATCTTCAGTAGAACATGGCTGCTCTGCTCCCTCTGTAAATATAATCTTAG                         GCATCAGGAACTATGGCTTTTCTTTTGGTTGCAACGACAACAATGTGCTGG
genomic: ATCTTCAGTAGAACATGGCTGCTCTGCTCCCTCTGTAAATATAATCTTAGgttggtttgc ... ctctgtgcagGCATCAGGAACTATGGCTTTTCTTTTGGTTGCAACGACAACAATGTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttatccatcagggaaattcttgcagctcacatgttcacatgactctgtgcagGCATCAGGAACTATGGCTTTTCTTTTGGTTGCAACGACAACAATGTGCTGGCTGGCCACCAGGTTGTGTGAAAGCCGCGGTTCTAGGCGCCCTCCACTAC
                          agctcac  putative branch site (score: 3)
                aaattctt  TA-rich tract