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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCATGACTGGAGAAACCCCAAGAACATTACTCTAGTTTCAACGACCCAATCATCCCAAAATTTCACCTACCGTTCACATTGCTCCTGTCCTGGCATGgtaccttttcttagattatgcatgttttgtgtcagcattttgcttgtgtgttgccccttttgtttggagttagattaatttattgtcatcccatttgattaatcggttctctactgttcatcaatgacaatcccttcaggtgttatcgtgctattggttgttgacataagcatctactgcag

Basic information

species Oryza sativa
transcript LOC_Os02g37950.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88450989|gb|CI531584.1|CI531584
EST:     ACATTGCTCCTGTCCTGGCATG                         GTGTTATATTATCTTGTCAGGATAGAGCCTTTTACGGCCCTTTCTATTCAG
genomic: ACATTGCTCCTGTCCTGGCATGgtaccttttc ... tctactgcagGTGTTATATTATCTTGTCAGGATAGAGCCTTTTACGGCCCTTTCTATTCAG
EST: gi|88294941|gb|CI522895.1|CI522895
EST:     CATCATCCCGAAATTTCACCTACCGTTCACATTGCTCCTGTCGTGGCATG                         GTGTTATATTATCTTGTCAGGATAGAGCCTTTTACGGCCCTTTCTATTCAG
genomic: AATCATCCCAAAATTTCACCTACCGTTCACATTGCTCCTGTCCTGGCATGgtaccttttc ... tctactgcagGTGTTATATTATCTTGTCAGGATAGAGCCTTTTACGGCCCTTTCTATTCAG